Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1947 ATGGATGAAATCGAAGTTCCACAATACTTCATTTGCCCAATATCACTCCAAATAATGAAAGATCCTGTTACTGCCATAACAGGAATAACATATGATCGAGACAGCATTGAACATTGGTTATTCACAAACAAGAACACAACATGTCCTGTCACAAAACAACCTCTTCCATTAGATTCTGATTTAACACCAAATCACACACTTCGTCGTTTGATTCAATCTTGGTGCACTCAAAATGCTTCACTTGGTATTGATAGAATTCCAACACCAAAACCACCACTCACAAAAACTCAAGTCCAAAAGCTTCTCAAAGGAATCAAAGATCCTAAGATTCAGCTCAAGAGTTTAATGCAGTTGGAATTGCTTGCTGCTGAGAAAGCGAGTAATAGAAAGATTTTGTTGGAAAATGGTGTGCCGAAAGCGATGATTATGTTCATAGTTGATTGTTACAAAAACGGCGAAATTTATGAAGGTATTGAAGAAGCTCTAGGTTTTCTACAATTTGTTAAGGTTCCTACAGAAGAAGTGAAGAATCTTCTATTTGAAAATAATCAAATACTTGATTCTTTAACATGGATTTTAGTATCCGAGATGAAAAACTCGGTTACTGTGAAATCTCACGCGGTTTTAGTGCTTAAAAAATTCATAAACAAATGCGATTCAACAGTTTTAGAGAGACTAAAACCCGAATTCTTCGAAAGAATTGTGAAAGTTCTAAGAAATGGTGTAATAACACAACAAGGTTTGTCTTCTGCTTTACATATTTTCCTCTATTGTTGTCCTTTGGGAAGAAATAGGTTAATGATGGTTGAAGCTGGTGCAATTTATGAACTAATAGAGATAGAATTAATGGCAATACATGAGAAAAGAATCACAGAACTCACATTTGGTATTTTGTTTCATTTGTGTTCTTGTGCTAATGGAAGATTTCAGTTTTTGAGTCATCAAGGTTCAATTGCAGTGTTAACTGAGAGACTCTTCAAGGTTTCAATGACAGTGGATGATAGAGCTGTTTTTATACTCTCTTTGATATCTAAATTTTCTGCTACAAAGATGGTTTTGGATGAGATGTTAAAAGTTGGAACTGTTGCAAAGCTTTTTGTTTTGCTTCAAACTGATCATGCTAAGTATTTGAAAGATAAAGTGATGGAAATATTTAAGGCTCATTCTGAGGTTTGGAAGAATTCTCCTTGTTTTCCTCAAACATCTTTATATGCTAGGTGA 1221 0.344 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDSIEHWLFTNKNTTCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASLGIDRIPTPKPPLTKTQVQKLLKGIKDPKIQLKSLMQLELLAAEKASNRKILLENGVPKAMIMFIVDCYKNGEIYEGIEEALGFLQFVKVPTEEVKNLLFENNQILDSLTWILVSEMKNSVTVKSHAVLVLKKFINKCDSTVLERLKPEFFERIVKVLRNGVITQQGLSSALHIFLYCCPLGRNRLMMVEAGAIYELIEIELMAIHEKRITELTFGILFHLCSCANGRFQFLSHQGSIAVLTERLFKVSMTVDDRAVFILSLISKFSATKMVLDEMLKVGTVAKLFVLLQTDHAKYLKDKVMEIFKAHSEVWKNSPCFPQTSLYAR* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1947 406 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Mtr1g1947 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Mtr1g1947 406 Gene3D - 96 391 IPR011989 -
Mtr1g1947 406 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Mtr1g1947 406 SUPERFAMILY ARM repeat 99 375 IPR016024 -
Mtr1g1947 406 PANTHER WDSAM1 PROTEIN 3 403 IPR045185 GO:0061630
Mtr1g1947 406 SUPERFAMILY RING/U-box 3 83 - -
Mtr1g1947 406 CDD RING-Ubox_PUB 10 53 IPR045210 -
Mtr1g1947 406 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Mtr1g1947 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1947 Mtr-Chr1 28824278 28825855 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1947 2 403 U-box Gene Family AT3G11840 42.117 3.38e-117 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1947 - - lja:Lj0g3v0014579.1 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1947 1 28824278 28825855 Mtr1g1947 1 28824278 28825855 ECH