Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1945 ATGAATCAAGATATTGAAGTTACACCATTTTTTCTATGCCCTATTTCACTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCATCGGAAAACAAAACATGTCCTGTCACAAAACAACTACTCACACATGATGCAAATCATCTCATTATTCTCACTCCAAACCACACTCTTCGTAGACTCATCCAAGCATGGTGCACCATGAATTCTTCTTATGGAATTGAAAGGATTCCAACACCAAAACCTCCAACAACAAAAATCCTTATAGAAAAACTCCTCAAAGAAGCTTCTGATTCACCTCATTTGCTTATTCAAACCCTAAAAAAGCTCAAAACAATTGCCTCTGAGAGCGAAACAAATAGACGGTGTATCGAATCGGCTGGCGCTGTCGAGTTTTTAGCATCAATAGTAACACAAAACAACACAAGTTGTTCATCTTCATGTTCAGCAACAGAATTAATTGAAGCTAGCTTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCTATAAACATCCTTTACAATCTTCAATTATCAGAACAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTTTTAGACTCTTTAATAAGATTATTACAAAAGGGTAACTACGACTCAAGAACATACGCAGTTTTTCTGTTGAAATCTATGTCAAAAGTAGCTGATCCATCAAAGCTAGCCAATCTAAAGACCGAGTTTTTCGTCGAGTTAGTTCAACTTCTCAAAGACCAGATATCAAAGAAAGCATCAAAAGCAACACTACAAACGTTAATTCAACTTGTCGAATTCGGAAGAAATAGAGTAAAAGCAATTGAATCAGGTTGTGTTTATGCTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATTTTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTCTTAAACCATGGATGCGGTTTAGCTATTGTTTCAAAGAAGATTTTGAGGGTTTCAACAATGGCTAATGATAGAGCTGTGAGAATTCTTCTATCTGTTTCAAGATTTTCTGCTACACATTTTGTTGTTCAAGAAATGTTGAGAATTGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATTCAAAGTCTTGGATGAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAAGTGGGTAA 1314 0.3577 MNQDIEVTPFFLCPISLQLMKDPVTVSTGITYDRESIEKWLFSSENKTCPVTKQLLTHDANHLIILTPNHTLRRLIQAWCTMNSSYGIERIPTPKPPTTKILIEKLLKEASDSPHLLIQTLKKLKTIASESETNRRCIESAGAVEFLASIVTQNNTSCSSSCSATELIEASFDDDDVEGFAFDFKIGAEDEAINILYNLQLSEQGLKTLLNFKNGEFLDSLIRLLQKGNYDSRTYAVFLLKSMSKVADPSKLANLKTEFFVELVQLLKDQISKKASKATLQTLIQLVEFGRNRVKAIESGCVYALIELLLDCKERKPCEMILVLLEMLCQCADGRFELLNHGCGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHFVVQEMLRIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKSWMNSHCIPFNLLASYPTSG* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1945 437 Pfam U-box domain 8 84 IPR003613 GO:0004842|GO:0016567
Mtr1g1945 437 Gene3D - 96 424 IPR011989 -
Mtr1g1945 437 SUPERFAMILY RING/U-box 5 88 - -
Mtr1g1945 437 SUPERFAMILY ARM repeat 102 371 IPR016024 -
Mtr1g1945 437 CDD RING-Ubox_PUB 11 54 IPR045210 -
Mtr1g1945 437 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 434 - -
Mtr1g1945 437 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Mtr1g1945 437 PANTHER WDSAM1 PROTEIN 3 434 IPR045185 GO:0061630
Mtr1g1945 437 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Mtr1g1945 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1945 Mtr-Chr1 28810140 28811767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1945 1 434 U-box Gene Family AT3G52450 54.442 4.85e-160 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1945 - - gmx:100809123 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1945 1 28810140 28811767 Mtr1g1945 1 28810140 28811767 ECH
Mtr7g3311 7 50273852 50275545 Mtr1g1945 1 28810140 28811767 PCT