Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1943 ATGAATCAAGATATTGAAGTTACACCATTTTTTCTATGCCCTATTTCACTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCATCGGAAAACAAAACATGTCCTGTCACAAAACAACAACTCACACATGATGCAAATCATCTCATTATTCTCACTCCAAACCACACTCTTCGTAGACTCATCCAAGCATGGTGCACCATGAATTCTTCTTATGGAATTGAAAGGATTCCAACACCAAAACCTCCAACAACAAAAATCCTTATAGAAAAACTCCTCAAAGAAGCTTCTGATTCACCTCATTTGCTTATTCAAACCCTAAAAAAGCTCAAAACAATTGCATCCGAGAGCGAAACAAATAGACGGTGTATCGAATCGGCCGGCGCTGTCGAGTTTTTAGCATCAATAGTAACACAAAACAACACAAGTTGTTCATCTTCATGTTCAGCAACAGAATTAATTGAAGCTAGCTTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCTATAAACATCCTTTACAATCTTCAATTATCAGAACAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTTCTAGACTCTTTAATGAAATTTTTCCAGAAGGGTAACTACGATTCAAGAACATACGCAGTTTGTTTGCTGAAATCTATGTCAAAAGTTGCTGATCCATCAAAACTAGCGAATCTAAAAACCGAGTATTTCGTCGAGTTAGTTCAACTTCTCAAAGACCAGATATCAAAGAAAGCATCAAAAGCAACACTACAAACGTTAATTCAACTTGTCGAATTCGGAAGAAATAGAGTAAAAGCAATTGAATCAGGTTGTGTTTCTGCTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATTTTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTTCTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTTTGAGGGTTTCAACAATGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTTTCTGCTACACATTTTGTTGTTCAAGAAATGTTGAGAATTGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATTCAAAGTCTTGGATGAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAAGTGGGTAA 1314 0.3607 MNQDIEVTPFFLCPISLQLMKDPVTVSTGITYDRESIEKWLFSSENKTCPVTKQQLTHDANHLIILTPNHTLRRLIQAWCTMNSSYGIERIPTPKPPTTKILIEKLLKEASDSPHLLIQTLKKLKTIASESETNRRCIESAGAVEFLASIVTQNNTSCSSSCSATELIEASFDDDDVEGFAFDFKIGAEDEAINILYNLQLSEQGLKTLLNFKNGEFLDSLMKFFQKGNYDSRTYAVCLLKSMSKVADPSKLANLKTEYFVELVQLLKDQISKKASKATLQTLIQLVEFGRNRVKAIESGCVSALIELLLDCKERKPCEMILVLLEMLCQCADGRFELLSHGCGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHFVVQEMLRIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKSWMNSHCIPFNLLASYPTSG* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1943 437 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Mtr1g1943 437 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 434 - -
Mtr1g1943 437 Pfam U-box domain 8 84 IPR003613 GO:0004842|GO:0016567
Mtr1g1943 437 PANTHER WDSAM1 PROTEIN 3 434 IPR045185 GO:0061630
Mtr1g1943 437 CDD RING-Ubox_PUB 11 54 IPR045210 -
Mtr1g1943 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Mtr1g1943 437 Gene3D - 97 425 IPR011989 -
Mtr1g1943 437 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Mtr1g1943 437 SUPERFAMILY RING/U-box 5 88 - -
Mtr1g1943 437 SUPERFAMILY ARM repeat 102 348 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1943 Mtr-Chr1 28793631 28795328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1943 1 434 U-box Gene Family AT3G52450 54.670 3.45e-159 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1943 - - gmx:100809123 550.821