Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1933 ATGGAGAATTTCCCCCCTCAATCACCCTCCTTGAAGAATAACGAATTTCTTCATGTTGCATCTGTCTCCAACACCATTGGCAACAAGATGTTGTACGCTGAGTGTCTTGTTATTGAACTGAGCAACCCCGATCTACGAGAAAATGCTCTTCATTTGCTCTCCAAGATGACAGATTTGTTTCGAGATCTCGCACCGTTGTTGTGGAATTCAATTGGTACTATTGCAATATTTTTACAGTGTGTGGCTTCCCACCCAGATACAAAGTTGTCATTCATGAAAGCTAACATACCTATATATTTGTATCCCTTCCTTAATACATCAAATAAGTTAGCACCATTTGAAGATTTAAGACTTGCCAGTCTTGGAGTCATTGCTGCCATGGTAAAGGTTAAGACTAAGGAAGCGATAGGTTTCCTTCTCGCGACTGAAGTAATGCCGTTGTGCCTACGCAATATGGAAATTGGCAAAGAATTGTCCAAAACCGTTGCAACATTTATTGTTGAGAAAATTCTGTCAGATGACGATGGTTTGGCATATATTTGTGGTACACCAGATCGTTTTTTTGCAGTTGGTCGAGCTTTGGACAGGATGTTGGCAAGTGTTGACAATCAACCTTCACCTCGTCTTTTGAAGCTTATGATTCCGTGTTATACAAGTCTAACAAAAAATGTAGGGTTCTTTAAGCCGAACCCAACTCCACCATCTTAA 708 0.404 MENFPPQSPSLKNNEFLHVASVSNTIGNKMLYAECLVIELSNPDLRENALHLLSKMTDLFRDLAPLLWNSIGTIAIFLQCVASHPDTKLSFMKANIPIYLYPFLNTSNKLAPFEDLRLASLGVIAAMVKVKTKEAIGFLLATEVMPLCLRNMEIGKELSKTVATFIVEKILSDDDGLAYICGTPDRFFAVGRALDRMLASVDNQPSPRLLKLMIPCYTSLTKNVGFFKPNPTPPS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1933 235 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 9-LIKE 77 222 - -
Mtr1g1933 235 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 9-LIKE 18 79 - -
Mtr1g1933 235 SUPERFAMILY ARM repeat 41 172 IPR016024 -
Mtr1g1933 235 PANTHER UNCHARACTERIZED 18 79 - -
Mtr1g1933 235 PANTHER UNCHARACTERIZED 77 222 - -
Mtr1g1933 235 Pfam Cell differentiation family, Rcd1-like 78 223 - -
Mtr1g1933 235 Gene3D - 26 227 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1933 Mtr-Chr1 28652899 28656835 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Mtr1g1933 Rcd1 1.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1933 K12606 - thj:104817897 246.128