Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1931 ATGAACAACTTATTCACCGGTTCATTTTCTCGCTTCCGTAGCGAAGAAGTTTCACCGGACCGGCACCACGTCATCGAGATGACAGACGGTGCCGGAACCAGAACCGGAGCAGGAGCAGGAGGTAGAATAAACCTTGACAAATTCTTCGACGATGTCGAAGGAGTAAAAGATGATCTAAAAGAGCTAGAATCAATCCACCAACGACTTTCAAAGACTAACGAACAGACGAAAACGGTTCACGATGCTAAAGGAGTGAAGGAGCTTCGTTCACGTATGGACGAAGAAGTTTCTGCGGCGTTGAAAAAGGCGAAGATGGTGAAGCTGAAGTTAGAGAAGTTGGAAAGATCTAATGCAGCGAACCGGAATTTGGAAGGGTGTGGACCGGGTTCATCGTCGGACCGGACGAGGAGTTCGGTGGTGAATGGATTGAAGAAGAAGTTGAAGGATTCTATGGAGAGTTTTAATCGTTTGCGTGAAGTTATTACAACGGAGTATAGAGAGACTGTTCAACGGCGTTTTTTTACTGTTACTGGAGAGAATCCTGATGATAAGACTCTTGATCTATTGATATCTACTGGTGAGAGTGAGACCTTTCTTCAGAAAGCAATTCAAGAACAAGGCAGGGGAAGAATTCTGGACACCATCAATGAAATTCAAGAGAGGCATGACGCTGTCAAAGACTTGGAGAAGAGTCTACTGGCATTGCACCAAGTGTTCCTCGACATGACAGTAATGGTACAATTTCAAGGCGAACAATTGGACGATATCGAGAGCCACGTGGCTAGGGCGAGCTCGTTTGTGCACACTGGAACCGATCAGTTACAAACTGCAAGGAAGCACCAGAAAAACACAAGGAAATGGGCCTGTTATTGTATTATACTTCTTCTGATCATCGTCTTGATTGTGGTTCTTGCCACAGTGAAACCATGGCAACATAATGATAGTGGAGGCGGTGGGGGTAATCAGCCTGCTCCAGCGCAGACTCCCCCGTCACCTCCTCCTCCTTCGGGTGGTACTTAA 1020 0.4637 MNNLFTGSFSRFRSEEVSPDRHHVIEMTDGAGTRTGAGAGGRINLDKFFDDVEGVKDDLKELESIHQRLSKTNEQTKTVHDAKGVKELRSRMDEEVSAALKKAKMVKLKLEKLERSNAANRNLEGCGPGSSSDRTRSSVVNGLKKKLKDSMESFNRLREVITTEYRETVQRRFFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDLEKSLLALHQVFLDMTVMVQFQGEQLDDIESHVARASSFVHTGTDQLQTARKHQKNTRKWACYCIILLLIIVLIVVLATVKPWQHNDSGGGGGNQPAPAQTPPSPPPPSGGT* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1931 339 SMART tSNARE_6 210 277 IPR000727 -
Mtr1g1931 339 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 315 - -
Mtr1g1931 339 Pfam SNARE domain 251 303 IPR000727 -
Mtr1g1931 339 MobiDBLite consensus disorder prediction 313 339 - -
Mtr1g1931 339 Gene3D - 43 174 - -
Mtr1g1931 339 CDD SNARE_syntaxin1-like 214 276 - -
Mtr1g1931 339 Coils Coil 52 72 - -
Mtr1g1931 339 Coils Coil 96 116 - -
Mtr1g1931 339 SMART SynN_4 40 166 IPR006011 GO:0016020
Mtr1g1931 339 CDD SynN 45 202 IPR006011 GO:0016020
Mtr1g1931 339 SUPERFAMILY t-snare proteins 44 270 IPR010989 GO:0016020|GO:0016192
Mtr1g1931 339 MobiDBLite consensus disorder prediction 119 138 - -
Mtr1g1931 339 Gene3D - 212 308 - -
Mtr1g1931 339 ProSitePatterns Syntaxin / epimorphin family signature. 221 260 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mtr1g1931 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 215 277 IPR000727 -
Mtr1g1931 339 PANTHER SYNTAXIN 7 315 IPR045242 -
Mtr1g1931 339 Pfam Syntaxin 47 250 IPR006011 GO:0016020
Mtr1g1931 339 MobiDBLite consensus disorder prediction 325 339 - -
Mtr1g1931 339 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1931 Mtr-Chr1 28623436 28625936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1931 37 333 SNARE and Associated Proteins AT3G11820 69.180 1.11e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1931 K08486 - gmx:100809258 465.692