Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1930 ATGAATGATTTATTCTCCGGCTCTTTCTCCCGGTTCCGTAACTCGGATCAAGTTTCGCCGGACAACCACCACCATGTGATCGAAATGTCATCACCGAACACTGCACAAACCGGTGTTCATCTCGACAAATTCTTCGAAGAAGTTGAAGGTGTTAAAGAGGAGTTGAAGGAGCTAGATCGTCTCTACGAAAGCCTTAGAGTCTCCCATGAGAGGAGCAAGACCCTTCACAGTGCGAAAGCTGTGAAGGATATTCGCTCCAAAATGGATGCTGACGTGGCTTTAGCTCTTAAGAAAGCTAAACTTGTTAAACTACGGCTCGAGGCACTTGACCGGTCCAACGAGGCTAGTAGGAGTTTGCCTGGTGCTGGACCTGGTTCGTCCTCGGACCGGACTAGAACATCTGTGGTGAGTGGTTTGAGGAAGAAGCTTAAGGATTCCATGGATAGCTTTAACAACCTTAGACAACAAATATCTTCTGAATATAGAGAAACTGTACAACGTAGATACTATACCGTTACCGGAGAGAATCCTGATGACAAAACCGTTGACCTCCTCATTTCCACTGGTGAAAGTGAAACATTTTTACAAAAAGCAATCCAGCAACAAGGAAGAGCAAACATCATGGACACAATCCAAGAAATTCAAGAGAGGCATGACACAGTGAAAGAGATAGAAAGAAATCTAATGGAGCTTCACCAAGTGTTTATGGACATGTCTGTTTTGGTTCAATCACAAGGTGAACAATTGGATAATATTGAAAGCCACGTGGCACGTGCTAATTCGTATGTTAGAGGTGGGGTCCAACAATTGCATGTTGCTAGGAAGCACCAAATGAATACCAGAAAATGGACTTGTATTGCCATCATAATTCTCCTCATTATCATCTTGATCATAGTTTTACCTATTGTCCTTAAAAAATAG 921 0.4289 MNDLFSGSFSRFRNSDQVSPDNHHHVIEMSSPNTAQTGVHLDKFFEEVEGVKEELKELDRLYESLRVSHERSKTLHSAKAVKDIRSKMDADVALALKKAKLVKLRLEALDRSNEASRSLPGAGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQQISSEYRETVQRRYYTVTGENPDDKTVDLLISTGESETFLQKAIQQQGRANIMDTIQEIQERHDTVKEIERNLMELHQVFMDMSVLVQSQGEQLDNIESHVARANSYVRGGVQQLHVARKHQMNTRKWTCIAIIILLIIILIIVLPIVLKK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1930 306 PANTHER SYNTAXIN 18 301 IPR045242 -
Mtr1g1930 306 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mtr1g1930 306 Gene3D - 200 304 - -
Mtr1g1930 306 SMART tSNARE_6 206 273 IPR000727 -
Mtr1g1930 306 CDD SynN 41 198 IPR006011 GO:0016020
Mtr1g1930 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 18 301 - -
Mtr1g1930 306 Gene3D - 39 171 - -
Mtr1g1930 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Mtr1g1930 306 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Mtr1g1930 306 Pfam SNARE domain 247 299 IPR000727 -
Mtr1g1930 306 SMART SynN_4 36 162 IPR006011 GO:0016020
Mtr1g1930 306 CDD SNARE_syntaxin1-like 210 270 - -
Mtr1g1930 306 MobiDBLite consensus disorder prediction 119 134 - -
Mtr1g1930 306 MobiDBLite consensus disorder prediction 112 135 - -
Mtr1g1930 306 Coils Coil 41 68 - -
Mtr1g1930 306 SUPERFAMILY t-snare proteins 39 266 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1930 Mtr-Chr1 28618726 28621749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1930 29 285 SNARE and Associated Proteins AT3G11820 73.541 4.57e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1930 K08486 - gmx:100793347 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3315 7 50326615 50328562 Mtr1g1930 1 28618726 28621749 PCT