Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1929 ATGGCTGGTGCAAGCACTGGTTCCTTCCCTATCTACCACAGACTCTTCAACCTTTCCTTTACTACCCATTCTTCCATTTCACACATCACCCTTAACTTCCCACACAGAACAACAACAACAACAACCATTTCTTCAAAACCCTTCAATCTAATCTCTCAATTATTCAACCCTCTTCATCCACCTCCTTCATTTTCATTCTATGAAGAAGAACAACAATTCTTTGAATCTGAATCTGAATCTGAATCTGAATCTGAATCTGAAACTGAAACTGAAACCTTACTTAACTCAGACCTAAATCAGGAAGCAGAATCAACCCAATCAAGAAGACTCTTTGTTGGAAACTTGCCATTTTCACTGTCTTCTTCACAATTGGCTCAACTCTTTGGAGAGGCTGGAAATGTTGTGTCTGTCGAGATTTTGTATGATGACATCACAAATAGAAGCAGAGGATTTGCTTTTGTTACAATGGGGAACGTGGAGGATGCTGAAGAAGCAATTCGAATGTTTGATGGCACTACAGTTGGAGGCAGGGCTATTAAGGTAAACTTCCCAGAAGTGCCCATAGTAGGAAAAAGGGTACAAATGGGCTCAACCTATAGAGGTTATGTAGATAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGATATGACTTCCCAGTATCTTAGAAAAGCCTTTGCTAAGCAACCAGGCTTACTGAGTGCCAAGGTCGTCTACGAAAGGAACAATGGAAAATCTCGCGGATATGGATTTGTCTCTTTCGAAACTGCTGAGGATGTAGAGGTTGCTTTGAGTGCTATGAATGGCGTGGAGGTTCAAGGCCGACCTTTACGACTGAAATTGGCTGTGGATAACAGGAAGCCTTCATCTCTTGATCAAAATAAAGGAAATAATGTTGATAGCTTGGAAATGTTATTTGGAATAAGCAAATGA 936 0.4103 MAGASTGSFPIYHRLFNLSFTTHSSISHITLNFPHRTTTTTTISSKPFNLISQLFNPLHPPPSFSFYEEEQQFFESESESESESESETETETLLNSDLNQEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVDNRKPSSLDQNKGNNVDSLEMLFGISK* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1929 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Mtr1g1929 311 SUPERFAMILY RNA-binding domain, RBD 96 185 IPR035979 GO:0003676
Mtr1g1929 311 PANTHER OS02G0815200 PROTEIN 1 294 - -
Mtr1g1929 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 279 IPR000504 GO:0003723
Mtr1g1929 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Mtr1g1929 311 CDD RRM_HP0827_like 109 185 - -
Mtr1g1929 311 Gene3D - 191 299 IPR012677 -
Mtr1g1929 311 SMART rrm1_1 109 182 IPR000504 GO:0003723
Mtr1g1929 311 SMART rrm1_1 208 281 IPR000504 GO:0003723
Mtr1g1929 311 SUPERFAMILY RNA-binding domain, RBD 204 295 IPR035979 GO:0003676
Mtr1g1929 311 Gene3D - 66 187 IPR012677 -
Mtr1g1929 311 MobiDBLite consensus disorder prediction 70 99 - -
Mtr1g1929 311 MobiDBLite consensus disorder prediction 72 90 - -
Mtr1g1929 311 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 294 - -
Mtr1g1929 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1929 Mtr-Chr1 28609486 28614262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1929 102 283 Eukaryotic Initiation Factors Gene Family AT2G23350 30.851 2.63e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1929 - - gmx:100799014 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1929 1 28609486 28614262 Mtr1g1929 1 28609486 28614262 ECH