Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1928 ATGGCTATGCAACCTGTTTATCTTAAAGAACATGAAGGAAATGTCCACAATTCTGTTGGACAGTTTTCATCTGTGACTTCAGCACCATGGTGGAGTAATGCCTATGGATCTCAACCTGTTTATGGAGGAGACTCTTGTGGCCAAATGAAACCTTTTTCACTAGAGCTTTCCAACTACATAGACCAACTTGCTCCGAGTAAGAACTTAGTTCGAGGAGTTGAACAATTGTTTGATAAAGGGCATACAAACCAATTCACCATCTTTCCAGATGATTGTAAGATGTCAGTTGATACACCAAATCATCAAGCAACCTTATCCCTGCAATCACCATTTGCTGCCGAGCCACTTAATCGATTTGAGCTAGGTTTTAACCAGTCTATGATCTGTGCAAAATATCCGTATATGGATCAATTTTACGGGCTCTTCTCGACTTATGGACCTCAAATCTCGGGGCGAATTATGCTTCCGCTTAGCATGACATCTGACGACGGACCAACATACGTGAATGCTAAGCAATACCATGGAATCATCAGACGCAGGCATTCTCGTGCCAAAGCTGTGCTTCAGAATAAATTGATAAAGCGTAACAAGCCATATATGCACGAATCGCGTCATCTACATGCAATGCGTAGACCAAGAGGATGCGGTGGTCGTTTCTTGAACACAAAAGTTTCTGCTAATGGAAACGGTAAAAGCGGGAGTGAAGAGAACGGAAACATTGGTGGCCTACAGCTGCAGTCCAGTGGTTCTCAGAGTTCCGAAGTCTTACAATCTGAGGTTGGAACTTTAAATTCGTCGAAGGAGACAAACGGAGGCAGTCCAAATGTCTCGGGGTCAGAGGTGACTAGCATGTATACACAGGGAGTTCTTGATAGCTTTACTGTCAATCATATCGGATCTACTGTCCACTCTTTGGGAGACATGATCGATACTGGACACGGTATCGTCATGCCAACAAAATGGTTTGCAGCAGCTGGCAGACAGCTGCTGGAACCATAA 999 0.4394 MAMQPVYLKEHEGNVHNSVGQFSSVTSAPWWSNAYGSQPVYGGDSCGQMKPFSLELSNYIDQLAPSKNLVRGVEQLFDKGHTNQFTIFPDDCKMSVDTPNHQATLSLQSPFAAEPLNRFELGFNQSMICAKYPYMDQFYGLFSTYGPQISGRIMLPLSMTSDDGPTYVNAKQYHGIIRRRHSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKVSANGNGKSGSEENGNIGGLQLQSSGSQSSEVLQSEVGTLNSSKETNGGSPNVSGSEVTSMYTQGVLDSFTVNHIGSTVHSLGDMIDTGHGIVMPTKWFAAAGRQLLEP* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1928 332 PRINTS CCAAT-binding transcription factor subunit B signature 165 187 IPR001289 GO:0003700|GO:0006355
Mtr1g1928 332 PRINTS CCAAT-binding transcription factor subunit B signature 196 219 IPR001289 GO:0003700|GO:0006355
Mtr1g1928 332 MobiDBLite consensus disorder prediction 211 280 - -
Mtr1g1928 332 ProSiteProfiles NF-YA/HAP2 family profile. 162 222 IPR001289 GO:0003700|GO:0006355
Mtr1g1928 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 165 219 IPR001289 GO:0003700|GO:0006355
Mtr1g1928 332 MobiDBLite consensus disorder prediction 222 280 - -
Mtr1g1928 332 SMART cbf3 161 222 IPR001289 GO:0003700|GO:0006355
Mtr1g1928 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 327 IPR001289 GO:0003700|GO:0006355
Mtr1g1928 332 Gene3D - 162 223 - -
Mtr1g1928 332 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1928 Mtr-Chr1 28605424 28608861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1928 27 326 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.548 3.45e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mtr1g1928 CBFB_NFYA 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1928 K08064 - gmx:100808195 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3318 7 50336822 50340956 Mtr1g1928 1 28605424 28608861 PCT