Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1925 ATGAACAACTCAACTGATTCATCTGGCTTCTTTGGCTCCAATGACATAAGTGGATTTGGTTATGGCATAGGAATTTCAATTGGTATTCTTTTACTCATTACAACCATCACACTCACCTCCTACTTTTGCACAAGATCACAAGTTCCAAATCCTCCTAGGAGAAGAAACAACAATAACACATCTGAATTTCTTGAACCTCAACATTCAATACTTGATTTTGGTTTAGATGAAGAAACAATTATGAGTTATCCAAAGATGTTATATTCTGAAGTGAAGCTTAACAAATATGATTCCACATCAACATGTTGTTCTATATGTTTAGGTGATTACAAAGGAAGTGATATGCTTAAGGTTTTACCTGATTGTAAACATATGTTTCACCTTAAATGTATAGAACCTTGGTTAAGGATACATCCTTCTTGTCCTCTTTGTAGAACTTCTCCAATTCCAACACCTCTTTCAACACCTTTGGCTGAAGTTGTTCCATTAGCAACAAGAAGAGATTCATAG 510 0.3471 MNNSTDSSGFFGSNDISGFGYGIGISIGILLLITTITLTSYFCTRSQVPNPPRRRNNNNTSEFLEPQHSILDFGLDEETIMSYPKMLYSEVKLNKYDSTSTCCSICLGDYKGSDMLKVLPDCKHMFHLKCIEPWLRIHPSCPLCRTSPIPTPLSTPLAEVVPLATRRDS* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1925 169 Pfam Ring finger domain 103 145 IPR001841 -
Mtr1g1925 169 CDD RING-H2_PA-TM-RING 102 145 - -
Mtr1g1925 169 SUPERFAMILY RING/U-box 81 150 - -
Mtr1g1925 169 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Mtr1g1925 169 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 4 167 - -
Mtr1g1925 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 149 IPR013083 -
Mtr1g1925 169 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 167 IPR045899 -
Mtr1g1925 169 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1925 Mtr-Chr1 28569497 28570366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1925 6 165 C3H Transcription Factor Family AT2G35910 61.728 2.51e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1925 - - gmx:100796149 247.669