Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g1925 | ATGAACAACTCAACTGATTCATCTGGCTTCTTTGGCTCCAATGACATAAGTGGATTTGGTTATGGCATAGGAATTTCAATTGGTATTCTTTTACTCATTACAACCATCACACTCACCTCCTACTTTTGCACAAGATCACAAGTTCCAAATCCTCCTAGGAGAAGAAACAACAATAACACATCTGAATTTCTTGAACCTCAACATTCAATACTTGATTTTGGTTTAGATGAAGAAACAATTATGAGTTATCCAAAGATGTTATATTCTGAAGTGAAGCTTAACAAATATGATTCCACATCAACATGTTGTTCTATATGTTTAGGTGATTACAAAGGAAGTGATATGCTTAAGGTTTTACCTGATTGTAAACATATGTTTCACCTTAAATGTATAGAACCTTGGTTAAGGATACATCCTTCTTGTCCTCTTTGTAGAACTTCTCCAATTCCAACACCTCTTTCAACACCTTTGGCTGAAGTTGTTCCATTAGCAACAAGAAGAGATTCATAG | 510 | 0.3471 | MNNSTDSSGFFGSNDISGFGYGIGISIGILLLITTITLTSYFCTRSQVPNPPRRRNNNNTSEFLEPQHSILDFGLDEETIMSYPKMLYSEVKLNKYDSTSTCCSICLGDYKGSDMLKVLPDCKHMFHLKCIEPWLRIHPSCPLCRTSPIPTPLSTPLAEVVPLATRRDS* | 170 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g1925 | 169 | Pfam | Ring finger domain | 103 | 145 | IPR001841 | - | |
Mtr1g1925 | 169 | CDD | RING-H2_PA-TM-RING | 102 | 145 | - | - | |
Mtr1g1925 | 169 | SUPERFAMILY | RING/U-box | 81 | 150 | - | - | |
Mtr1g1925 | 169 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
Mtr1g1925 | 169 | PANTHER | RING-H2 FINGER PROTEIN ATL70-LIKE | 4 | 167 | - | - | |
Mtr1g1925 | 169 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 149 | IPR013083 | - | |
Mtr1g1925 | 169 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 4 | 167 | IPR045899 | - | |
Mtr1g1925 | 169 | SMART | ring_2 | 103 | 144 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g1925 | Mtr-Chr1 | 28569497 | 28570366 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g1925 | 6 | 165 | C3H Transcription Factor Family | AT2G35910 | 61.728 | 2.51e-59 | 182 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g1925 | - | - | gmx:100796149 | 247.669 |