Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1911 ATGGTGTTCACGATTTCCTCATTTGATGTTGCTAGCAACAGTGGTTCGTATCGACCATCACGCAATGAATACAAACTGAATTTCACAATCAACACAAAAGTCAAACTATCTAAAACTGTTTTGGTCCCAACAAACGTGTATTCGTTTACATCTGCATATGATGTTTTCAATGAATCTTACGACAACAACTTCTTGGTAGATGTAATTGGAGTCATGACTGGAGTTGGAGTTGAAAGAGAGTACGAAAGAGATGGTGTAAAAACTAAAATGAATGTCATTGAATTGGATTCAAATGGGTATCGTTTTAAATGTACTCTTTTTGGAGAGTATGTTGAAGAGCTGAGCTCTTTCCTATCGTCCGGTGAATCTCAAAATGTTGTTGTAGCCATTATGTTGGCAAAAGTTAAATTGTTTCAAGGAAAATCAGCATTGCAAAATGCATTTTCTTCCACTAGAATCACATTCAATCCTGAAATTGGTGAAACAAAGGAACTAAGGAAAAGCTTTCTTAGTGCAAATACAAATTCTCCTGCATCGGGATTGATCCAATTACCAAATTCATCTCGCATACTTGTAAATGAAGAGTTTCTCTTACTTACTCCTAGGACCACTATTGAGGAGTTAAAGAATGTTAATAAGGTTGTTTTTTTTTTTTTATTACAAGTCTATTTTGGTAAAGTTTGTACACCTTTTGGTACAATGTTATTTTGTATATTGATGCAAGGCACCTCTTTTATTGTCTTGGGAATTTCAATTTTCAATTGA 765 0.3425 MVFTISSFDVASNSGSYRPSRNEYKLNFTINTKVKLSKTVLVPTNVYSFTSAYDVFNESYDNNFLVDVIGVMTGVGVEREYERDGVKTKMNVIELDSNGYRFKCTLFGEYVEELSSFLSSGESQNVVVAIMLAKVKLFQGKSALQNAFSSTRITFNPEIGETKELRKSFLSANTNSPASGLIQLPNSSRILVNEEFLLLTPRTTIEELKNVNKVVFFFLLQVYFGKVCTPFGTMLFCILMQGTSFIVLGISIFN* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1911 254 Pfam Domain of unknown function DUF223 2 65 IPR003871 -
Mtr1g1911 254 SUPERFAMILY Nucleic acid-binding proteins 48 169 IPR012340 -
Mtr1g1911 254 CDD RPA1_DBD_B_like 67 169 - -
Mtr1g1911 254 PANTHER REPLICATION FACTOR A 1, RFA1 8 213 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr1g1911 254 Gene3D - 42 179 IPR012340 -
Mtr1g1911 254 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 8 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1911 Mtr-Chr1 28302982 28304495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1911 15 169 Core DNA Replication Machinery Family AT2G06510 29.412 1.22e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1911 - - mtr:MTR_8g088810 375.555