Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1887 ATGGAGAGAGGAAATACGATGGGGATATCTAGGACACAATCAGATCAGCTGGCGGAGTCGATGGTGGCGGCTCTAAAGTCGCCACAGTCGAGTGATCACTCGACAAACGGAGCATTGGAAGGGAGCGGAGGACTTTCGAGAAAATCAAGCCGGAGGATAACGGCTGCGTCGCCGGGCCGTGGAGGAAGTAAGAACTCACACATAAGGAAAACAAGAAGTGCTCAATTGAAGATTGATTTTGATGAGTTGGGTAGTGGTGCTGCTCTTAGTCGTGCTTCAAGTGCCAGCTTGGGTCTCTCATTTGGCTTCACTGGTTTCACTATGCCTCCTGATCAAATTGCTGATACCAAACCATTTAGTGATGATGATATGATTCCTGAGGATATTGAAGCTGGACCTAGGGCAAGGATAAAGTTTCAAACTGAACCTACTCTTCCTATATATCTAAAGTTCACTGATGTGACCTACAAGGTAGTACTAAAAGGCATGACATCAAGTGAGGAGAAGGATATCTTGTATGGGATCAGTGGTTCTGTAAATCCAGGTGAAGTTTTGGCATTGATGGGTCCCTCAGGAAGTGGAAAGACAAGTCTTTTAAATCTCCTTGGAGGAAGAATAAGCCAGCCCACAATTGGTGGTTCTATCACTTACAATGACCAATCATATTCCAAGTTTCTCAAAAGCAGGATAGGATTTGTGACACAAGATGATGTTTTGTTTCCTCACCTAACTGTGAAAGAGACATTAACGTACGCGGCTCGGTTAAGGCTTCCAAAGACATTAACTAAGGAACAAAAGGAACAAAGAGCTTTAGATGTCATCTATGAGCTTGGATTAGAAAGGTGCCAAGATACTATGATCGGTGGTTCATTTGTTCGTGGAGTATCCGGTGGAGAGAGGAAGAGAGTTTGTATTGGTAATGAGATTATAATCAATCCTTCCATTCTGTTTCTTGATGAACCAACATCTGGTTTGGATTCGACAACCGCCTTGAAGATCGTTCAGATGCTGCAAGACATAGCAGAGGCTGGAAAAACAGTAGTGACAACAATTCACCAACCATCAAGTAGACTCTTTCACAAATTTGACAAGTTGATCCTTCTTGGAAAAGGGAGTTTGCTTTACTTTGGAAAAGCATCAGAAGTGATGAATTACTTTCAATCTATAGGATGTTCACCGCTTATTTCCATGAATCCAGCAGAGTTTTTGCTAGACCTTGCTAATGGAAATATAAATGATGTTTCTGTACCATCGGAGTTGGAGGATAAAGTGCAAATTGGAAATGCAGCAGTTGAAACATATCATGGAAAACCATCACCAGCAGATGTCCATGAGTATCTAGTGGAGGCATATGAATCTCGAGTTGCGGAAACAGAGAAGAAAAAGATAATGGTTTCTGTACCTCTAGATGAAGATTTAAAGGCCAAAGTTGTTTCTGCTAAAAGACAATGGGGAGCAAGATGGGATGAACAATTTTCCATACTTTTTTGGAGAGGAATCAAGGAAAGGAGGCATGACTATTTTAGCTGGTTAAGAATCACACAAGTTTTATCCACTGCAATCATCTTAGGATTACTCTGGTGGCAATCCGATGCTAAGAACCCAAAAGATCTGCAAGATCAGGCAGGATTACTATTCTTTATTGCGGTGTTCTGGGGATTCTTTCCAGTTTTTACAGCAATATTTACATTTCCTCAAGAAAGAGCCATGTTAAATAAAGAACGTGCAGCAGATATGTACAGATTAAGCGCATACTTCCTTGCTAGAACAACGAGCGACCTTCCATTAGACCTGATATTACCAGTGCTTTTTCTCCTTGTTGTTTACTTCATGGCTGGTCTAAGACTAAGTGCTGCTCCCTTTTTCCTCACCATTCTTACTGTTTTCCTCTGCATCATTGCAGCTCAGGGTCTTGGACTTGCTATCGGTGCTACGCTTATGGACTTGAAAAGAGCAACAACTTTGGCTTCGGTAACGGTGATGACCTTCATGCTGGCTGGAGGATTTTTCGTCCAGAAAGTCCCAATATTCATTTCTTGGATCCGCTACATGTCTTTCAACTACCACACTTACAAACTGTTGCTCAAGGTGCAATATGAACATCTCACACCTATCGTAAATGGAATCAAAATTGACAGTGGTTTAACAGAAGTAGCTGCTCTGATTGCCATGGTTTTTGGTTACCGTTTCTTGGCATATCTTTCGTTGCGGCGAATGAAACTTCAATAG 2229 0.4186 MERGNTMGISRTQSDQLAESMVAALKSPQSSDHSTNGALEGSGGLSRKSSRRITAASPGRGGSKNSHIRKTRSAQLKIDFDELGSGAALSRASSASLGLSFGFTGFTMPPDQIADTKPFSDDDMIPEDIEAGPRARIKFQTEPTLPIYLKFTDVTYKVVLKGMTSSEEKDILYGISGSVNPGEVLALMGPSGSGKTSLLNLLGGRISQPTIGGSITYNDQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTKEQKEQRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEVMNYFQSIGCSPLISMNPAEFLLDLANGNINDVSVPSELEDKVQIGNAAVETYHGKPSPADVHEYLVEAYESRVAETEKKKIMVSVPLDEDLKAKVVSAKRQWGARWDEQFSILFWRGIKERRHDYFSWLRITQVLSTAIILGLLWWQSDAKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSAAPFFLTILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPIFISWIRYMSFNYHTYKLLLKVQYEHLTPIVNGIKIDSGLTEVAALIAMVFGYRFLAYLSLRRMKLQ* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1887 742 MobiDBLite consensus disorder prediction 6 53 - -
Mtr1g1887 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 388 IPR027417 -
Mtr1g1887 742 Pfam ABC-2 type transporter 352 457 IPR043926 GO:0140359
Mtr1g1887 742 MobiDBLite consensus disorder prediction 1 70 - -
Mtr1g1887 742 Gene3D - 148 390 IPR027417 -
Mtr1g1887 742 CDD ABCG_EPDR 146 377 - -
Mtr1g1887 742 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 12 739 - -
Mtr1g1887 742 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 149 395 IPR003439 GO:0005524
Mtr1g1887 742 Pfam ABC transporter 174 323 IPR003439 GO:0005524
Mtr1g1887 742 ProSitePatterns ABC transporters family signature. 295 309 IPR017871 GO:0005524
Mtr1g1887 742 SMART AAA_5 181 372 IPR003593 -
Mtr1g1887 742 Pfam ABC-2 type transporter 490 699 IPR013525 GO:0016020|GO:0140359
Mtr1g1887 742 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 12 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1887 Mtr-Chr1 27986807 28016436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1887 147 409 Calmodulin-binding Proteins AT2G36910 28.625 1.63e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1887 K05681 - gmx:100798801 1240.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1887 1 27986807 28016436 Mtr1g1887 1 27986807 28016436 ECH
Mtr7g3340 7 50540801 50549136 Mtr1g1887 1 27986807 28016436 PCT