Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1874 ATGAACCAATGCACCAAAATTAGGGTTTATCACATTCCATACTCTCTCCATTCTCAGCAGCTTCAGTTTGGTTGCCGCATCCACCACATTCACGCCATGGCTGATGTCATTGAAGAACCTGTTGCAGTCGTGTCAGATCCAAACCTCATTGAAGTCAAGCTCTTCAACCGCTGGAGCTTCGATGACGTTCAGATTACTGATTTGTCTCTTGGGGATTACATTGGAGCAAGATCCAAACATGCAACATATGTTCCACACACTGCTGGTAGATACTCAAAGAAGAGATTCAGGAAAGCTCAGTGTCCCATTGTCGAGAGGCTCACTAACTCTCTCATGATGCATGGGAGGAACAATGGAAAGAAGCTTATGGCAGTTAGGATTATCAAGCATGCTATGGAGATTATTCATTTGCTAACTGACCAGAACCCAATTCAGGTCATCGTTGATGCTGTCGTCAACAGTGGCCCTCGTGAAGATGCAACTCGTATTGGTTCTGCTGGAGTTGTAAGAAGACAGGCTGTGGATATCTCACCCCTTCGTCGTGTGAATCAAGCCATCTATCTTCTAACTACTGGTGCACGTGAAGCGGCCTTTAGAAATATTAAGACAATTGCTGAATGTCTTGCTGATGAACTTATTAATGCAGCAAAAGGATCATCCAACAGCTATGCAATCAAGAAAAAAGATGAAATTGAAAGAGTTGCCAAGGCAAATCGTTAA 720 0.4347 MNQCTKIRVYHIPYSLHSQQLQFGCRIHHIHAMADVIEEPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGARSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1874 239 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 8 239 IPR000235 GO:0006412
Mtr1g1874 239 TIGRFAM uS7_euk_arch: ribosomal protein uS7 51 239 IPR005716 GO:0003735|GO:0006412|GO:0015935
Mtr1g1874 239 Pfam Ribosomal protein S7p/S5e 97 239 IPR023798 -
Mtr1g1874 239 ProSitePatterns Ribosomal protein S7 signature. 105 131 IPR020606 GO:0003723|GO:0003735|GO:0006412
Mtr1g1874 239 PANTHER RIBOSOMAL PROTEIN S7 36 239 IPR000235 GO:0006412
Mtr1g1874 239 CDD uS7_Eukaryote 53 239 IPR005716 GO:0003735|GO:0006412|GO:0015935
Mtr1g1874 239 PANTHER 40S RIBOSOMAL PROTEIN S5 36 239 - -
Mtr1g1874 239 Gene3D Ribosomal protein S7 domain 36 239 IPR036823 -
Mtr1g1874 239 SUPERFAMILY Ribosomal protein S7 53 239 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1874 Mtr-Chr1 27748886 27752383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1874 51 239 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 92.105 7.36e-130 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1874 K02989 - gmx:100305898 362.459