Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1864 ATGAGGGGAAGAAGTTACAGTTACAGTCCTTCACCTCCAAGGCGTTATGGTGGAAGGAGACGCAGTCCGAGTCCAAGAGGCCGGTATGGAGGACGTTATAGAGGTGGCCGTGATAGGGATCTGCCTACAAGTCTTCTCGTCCGAAACCTGGCCAAAGATTGCAGGCCAGAAGATCTGCACGATCCATTTGGACAGTTTGGTCCTGTCAAGGATGTTTACCTGCCTCGTGATTATTATACTGGGGAGCCAAGGGGTTTTGGGTTTGTTCAATTTGTGGATCCAGCTGATGCTGCCGATGCGAAATATCACATGGATGGTCAAGTTCTTCTTGGCCGTGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAGAAACCTCAAGAAATGAGAGCAAGAGAACGTGGGAGGTCATATGATTATAGGCGATCTCCACGTCGTCGTTCTCGTTCACCACGCTATGCTCGAACCTATTCTCGTAGTCCAGACTATACACCTTCACCAAGACCAAGGCGATATTCCAGGTCCATCTCACCAAGAGACGAAAGGTATAGGAGACGGTCATACTCTAGATCCCCTTACAGATCACCTTATGGATCTAGAAGCCCTGATCGAGGTAGGAGTTACAGCAGGAGCATAAGCCGCAGTCCAGGGTACTCAAGGTGA 663 0.4902 MRGRSYSYSPSPPRRYGGRRRSPSPRGRYGGRYRGGRDRDLPTSLLVRNLAKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRRSRSPRYARTYSRSPDYTPSPRPRRYSRSISPRDERYRRRSYSRSPYRSPYGSRSPDRGRSYSRSISRSPGYSR* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1864 220 MobiDBLite consensus disorder prediction 1 40 - -
Mtr1g1864 220 SUPERFAMILY RNA-binding domain, RBD 43 149 IPR035979 GO:0003676
Mtr1g1864 220 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 214 - -
Mtr1g1864 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
Mtr1g1864 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 114 IPR000504 GO:0003723
Mtr1g1864 220 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 214 - -
Mtr1g1864 220 MobiDBLite consensus disorder prediction 123 220 - -
Mtr1g1864 220 MobiDBLite consensus disorder prediction 123 140 - -
Mtr1g1864 220 Gene3D - 37 152 IPR012677 -
Mtr1g1864 220 MobiDBLite consensus disorder prediction 173 188 - -
Mtr1g1864 220 MobiDBLite consensus disorder prediction 192 220 - -
Mtr1g1864 220 SMART rrm1_1 44 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1864 Mtr-Chr1 27625648 27628551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1864 43 164 Eukaryotic Initiation Factors Gene Family AT3G16380 31.148 2.76e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1864 K12900 - gmx:100816913 192.586