Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1862 ATGGCAATGTCACATTCACTTCTCCGTTTAGCTTCTTCACGTTTCACTAAACCACTTCACCTCTTCTCATTCTCATTTTCATTCTCTACAACCTCAACTCAAAAGCCACCTCCCATCCAAGTCTCCCTTACAGACACAGTGGGTCGCGCCGTATTCGCAACTCGTCCAATCCCTACTGGAGATCTCATCCACACCGCCGAACCCGCCGTCTGCCACCCTTCACCCTCCGCCCCCCACCCCGTCTGTTACTCTTGTCTCGCCAGACTCCCTAATCTCTCTTCACCCTTTTGTTCTCACCGTTGCCGCACTCTTACCCAGGAATATTACGATGTTGAGATGAAAGCAAATTGGATGGATTTTAATAACTATTGCCGGAACCGAGGTTTAAAATTTCCCTTTCTGGTAAAGCGGTTGGCTTGCATGATCATATCAGGAGTTGCTAGAAGTGACAGTCTTGACATACTTCAACCTGCCAGTTTGACACCTGAGATGATTTTAGAGATGGAAGAGGGGTTCAACTTGCTAAGGAATGCCTTCACAAAGGCACTAATTGCAGATGAACAAATTGCTTTTTTAACCAAACAATGGTACATCAGTGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGGTCATATGAAGATCTTCTTTCTTCGGCATTTGCATCTGTAGAAGCCGAAGCTGCTGTTGGAAATGCTGTCTATATTCTTGCTTCCTTCTATAATCATGACTGTGATCCCAATGCACACATTATATGGATAGATAATGCAGTGGCAAAATTGAAGGCCCTCCGTGACATTCATGAAGGCGAAGAACTCAGAATCTGCTATATTGATGCCAGTATGGACCGTGATGCTCGGCGAGAACTATTGTTTCAAGGTTTCGGTTTTCAATGCAATTGTAGTAGGTGCTTGCATGGTGATTAG 945 0.4497 MAMSHSLLRLASSRFTKPLHLFSFSFSFSTTSTQKPPPIQVSLTDTVGRAVFATRPIPTGDLIHTAEPAVCHPSPSAPHPVCYSCLARLPNLSSPFCSHRCRTLTQEYYDVEMKANWMDFNNYCRNRGLKFPFLVKRLACMIISGVARSDSLDILQPASLTPEMILEMEEGFNLLRNAFTKALIADEQIAFLTKQWYISVLARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAVGNAVYILASFYNHDCDPNAHIIWIDNAVAKLKALRDIHEGEELRICYIDASMDRDARRELLFQGFGFQCNCSRCLHGD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1862 314 CDD SET_SMYD 223 310 - -
Mtr1g1862 314 Gene3D - 81 123 - -
Mtr1g1862 314 Gene3D SET domain 50 310 IPR046341 -
Mtr1g1862 314 ProSiteProfiles SET domain profile. 37 284 IPR001214 GO:0005515
Mtr1g1862 314 SUPERFAMILY SET domain 34 310 IPR046341 -
Mtr1g1862 314 Pfam SET domain 48 283 IPR001214 GO:0005515
Mtr1g1862 314 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 43 311 - -
Mtr1g1862 314 Gene3D - 124 208 - -
Mtr1g1862 314 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3 43 311 - -
Mtr1g1862 314 SMART set_7 37 290 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1862 Mtr-Chr1 27607317 27614006 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr1g1862 SET 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1862 - - lja:Lj0g3v0252639.2 499.59