Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1859 ATGTCTGCAACTATGAGAACAGCTACATGGGCAGATTCTGCTGACAATGCAGCTAATGCTTCATCCACCGCGCGCCCGGTCAAGCCGGCTTATGTTCCTCCGCATCTTCGTAACCGATCAATGGCTGCTCCGGCCGAGCCACCTTCTTTGGTGGCTAATGATAGGGGTTTGGGTAATAATTGGGGTAGTTCGTCGAATTTTAAGCAGGATTTTGGGGCTGGGAGACAAGTAGGTGGAGGTTATGGTGGTGGTGGTGGTGGGTTTGGTGGGTTTAACAGAGGAGGAGCAGGGAATGGAAGGGAGCGCGTGGGTGGAGGTGGAGGAAGACGTGAGGCAAATCCATTTGAGAACGATGTTGATGAACCGTTTACTGAGCAAGAGAATACGGGGATTAACTTTGATGCTTATGATGATATTCCTGTGGAGACGAGTGGGGAGAATGTTCCGCCTCCGGTGAATACGTTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAATATAAAGAGATGTAAGTACGTGAAACCGACACCGGTTCAGAGGTATGCTATACCGATTTCGCTTGCTGGGAGAGATTTGATGGCTTGTGCTCAGACGGGTTCAGGAAAGACAGCTGCATTTTGCTTTCCGATTATAAGCGGAATCCTTACGGAGCAGTATGCTCAAAGACCACGTGTGGCACGGACTGCTTATCCTCTTGCACTTATCCTGTCCCCTACCCGGGAGCTCTCTTGTCAGATACATGACGAGGCCAAGAAGTTTTCTTATCAAACTGGGGTCAAGGTCGTAGTTGCTTATGGAGGAGCACCGATCACCCAACAGTTGCGGGAGCTTGAGAGAGGTGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATCTAGCTCTTGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGCTGTTTAGTGCTACATTTCCCAAAGAGATTCAGAGACTTGCTTCAGATTTTCTTGCTAGTTATATCTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTAGAATATGTGCTGGAGTCTGACAAGAGAAGCCACCTCATGGACCTCCTTCATGCTCAGAGAGAAAATGATGTGAATGGCAAGCAAGGTCTGACTTTAGTGTTTGTGGAAACGAAGAAAGGTGCTGATGCATTGGAACACTGCTTGTGTGTTAACGGGTTTCCTGCAACTTGCATTCATGGCGACAGAACACAGCAAGAAAGAGAACAAGCATTGAGATCATTCAAGACTGGAAACACACCAATTCTAGTGGCAACAGATGTTGCAGCACGTGGTCTTGATATTCCGCGGGTAGCACATGTGGTAAACTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGACGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCATGGCTCACCCGTTATGCAGCAAGGACTCCTTATGGTGGTGGTAGAAACAAGCGGACTGGGGGAGCCCGGTTTGGTGGCCGTGATGTTAGGAAGGAGAGCTCATATAATAAAGGAAATGATTACTATGGTGGAAACGGTGGTGGTTATGGTGTTCCTGCCAGTTATGGCGGAGGGTATGGTCAAGGTGTAACTAGTGCTTGGGATTAG 1827 0.474 MSATMRTATWADSADNAANASSTARPVKPAYVPPHLRNRSMAAPAEPPSLVANDRGLGNNWGSSSNFKQDFGAGRQVGGGYGGGGGGFGGFNRGGAGNGRERVGGGGGRREANPFENDVDEPFTEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILTEQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGGRNKRTGGARFGGRDVRKESSYNKGNDYYGGNGGGYGVPASYGGGYGQGVTSAWD* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1859 608 Gene3D - 371 549 IPR027417 -
Mtr1g1859 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 546 IPR001650 -
Mtr1g1859 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 524 IPR027417 -
Mtr1g1859 608 MobiDBLite consensus disorder prediction 91 122 - -
Mtr1g1859 608 MobiDBLite consensus disorder prediction 1 23 - -
Mtr1g1859 608 MobiDBLite consensus disorder prediction 561 575 - -
Mtr1g1859 608 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Mtr1g1859 608 Pfam DEAD/DEAH box helicase 177 357 IPR011545 GO:0003676|GO:0005524
Mtr1g1859 608 SMART ultradead3 172 383 IPR014001 -
Mtr1g1859 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 368 IPR014001 -
Mtr1g1859 608 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 37 579 - -
Mtr1g1859 608 CDD SF2_C_DEAD 380 516 - -
Mtr1g1859 608 MobiDBLite consensus disorder prediction 552 577 - -
Mtr1g1859 608 CDD DEADc_DDX3_DDX4 154 374 IPR044763 GO:0003724|GO:0005524
Mtr1g1859 608 Pfam Helicase conserved C-terminal domain 392 507 IPR001650 -
Mtr1g1859 608 SMART helicmild6 426 507 IPR001650 -
Mtr1g1859 608 Gene3D - 111 370 IPR027417 -
Mtr1g1859 608 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 579 - -
Mtr1g1859 608 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1859 Mtr-Chr1 27565423 27570613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1859 151 539 Eukaryotic Initiation Factors Gene Family AT3G19760 30.179 4.74e-59 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1859 K11594 - gmx:100818326 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1859 1 27565423 27570613 Mtr1g1859 1 27565423 27570613 ECH