Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g1859 | ATGTCTGCAACTATGAGAACAGCTACATGGGCAGATTCTGCTGACAATGCAGCTAATGCTTCATCCACCGCGCGCCCGGTCAAGCCGGCTTATGTTCCTCCGCATCTTCGTAACCGATCAATGGCTGCTCCGGCCGAGCCACCTTCTTTGGTGGCTAATGATAGGGGTTTGGGTAATAATTGGGGTAGTTCGTCGAATTTTAAGCAGGATTTTGGGGCTGGGAGACAAGTAGGTGGAGGTTATGGTGGTGGTGGTGGTGGGTTTGGTGGGTTTAACAGAGGAGGAGCAGGGAATGGAAGGGAGCGCGTGGGTGGAGGTGGAGGAAGACGTGAGGCAAATCCATTTGAGAACGATGTTGATGAACCGTTTACTGAGCAAGAGAATACGGGGATTAACTTTGATGCTTATGATGATATTCCTGTGGAGACGAGTGGGGAGAATGTTCCGCCTCCGGTGAATACGTTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAATATAAAGAGATGTAAGTACGTGAAACCGACACCGGTTCAGAGGTATGCTATACCGATTTCGCTTGCTGGGAGAGATTTGATGGCTTGTGCTCAGACGGGTTCAGGAAAGACAGCTGCATTTTGCTTTCCGATTATAAGCGGAATCCTTACGGAGCAGTATGCTCAAAGACCACGTGTGGCACGGACTGCTTATCCTCTTGCACTTATCCTGTCCCCTACCCGGGAGCTCTCTTGTCAGATACATGACGAGGCCAAGAAGTTTTCTTATCAAACTGGGGTCAAGGTCGTAGTTGCTTATGGAGGAGCACCGATCACCCAACAGTTGCGGGAGCTTGAGAGAGGTGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATCTAGCTCTTGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGCTGTTTAGTGCTACATTTCCCAAAGAGATTCAGAGACTTGCTTCAGATTTTCTTGCTAGTTATATCTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTAGAATATGTGCTGGAGTCTGACAAGAGAAGCCACCTCATGGACCTCCTTCATGCTCAGAGAGAAAATGATGTGAATGGCAAGCAAGGTCTGACTTTAGTGTTTGTGGAAACGAAGAAAGGTGCTGATGCATTGGAACACTGCTTGTGTGTTAACGGGTTTCCTGCAACTTGCATTCATGGCGACAGAACACAGCAAGAAAGAGAACAAGCATTGAGATCATTCAAGACTGGAAACACACCAATTCTAGTGGCAACAGATGTTGCAGCACGTGGTCTTGATATTCCGCGGGTAGCACATGTGGTAAACTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGACGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCATGGCTCACCCGTTATGCAGCAAGGACTCCTTATGGTGGTGGTAGAAACAAGCGGACTGGGGGAGCCCGGTTTGGTGGCCGTGATGTTAGGAAGGAGAGCTCATATAATAAAGGAAATGATTACTATGGTGGAAACGGTGGTGGTTATGGTGTTCCTGCCAGTTATGGCGGAGGGTATGGTCAAGGTGTAACTAGTGCTTGGGATTAG | 1827 | 0.474 | MSATMRTATWADSADNAANASSTARPVKPAYVPPHLRNRSMAAPAEPPSLVANDRGLGNNWGSSSNFKQDFGAGRQVGGGYGGGGGGFGGFNRGGAGNGRERVGGGGGRREANPFENDVDEPFTEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILTEQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGGRNKRTGGARFGGRDVRKESSYNKGNDYYGGNGGGYGVPASYGGGYGQGVTSAWD* | 609 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g1859 | 608 | Gene3D | - | 371 | 549 | IPR027417 | - | |
Mtr1g1859 | 608 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 395 | 546 | IPR001650 | - | |
Mtr1g1859 | 608 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 233 | 524 | IPR027417 | - | |
Mtr1g1859 | 608 | MobiDBLite | consensus disorder prediction | 91 | 122 | - | - | |
Mtr1g1859 | 608 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Mtr1g1859 | 608 | MobiDBLite | consensus disorder prediction | 561 | 575 | - | - | |
Mtr1g1859 | 608 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 153 | 181 | IPR014014 | GO:0003724 | |
Mtr1g1859 | 608 | Pfam | DEAD/DEAH box helicase | 177 | 357 | IPR011545 | GO:0003676|GO:0005524 | |
Mtr1g1859 | 608 | SMART | ultradead3 | 172 | 383 | IPR014001 | - | |
Mtr1g1859 | 608 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 184 | 368 | IPR014001 | - | |
Mtr1g1859 | 608 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED | 37 | 579 | - | - | |
Mtr1g1859 | 608 | CDD | SF2_C_DEAD | 380 | 516 | - | - | |
Mtr1g1859 | 608 | MobiDBLite | consensus disorder prediction | 552 | 577 | - | - | |
Mtr1g1859 | 608 | CDD | DEADc_DDX3_DDX4 | 154 | 374 | IPR044763 | GO:0003724|GO:0005524 | |
Mtr1g1859 | 608 | Pfam | Helicase conserved C-terminal domain | 392 | 507 | IPR001650 | - | |
Mtr1g1859 | 608 | SMART | helicmild6 | 426 | 507 | IPR001650 | - | |
Mtr1g1859 | 608 | Gene3D | - | 111 | 370 | IPR027417 | - | |
Mtr1g1859 | 608 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 37 | 579 | - | - | |
Mtr1g1859 | 608 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g1859 | Mtr-Chr1 | 27565423 | 27570613 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g1859 | 151 | 539 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 30.179 | 4.74e-59 | 201 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g1859 | K11594 | - | gmx:100818326 | 894.804 |