Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1848 ATGGAAAATAACGAAAATGAAGTTATCGGCGAAGAAGAAGAAGTGCATTCCGTAAATTTTGTAAATGAAGAGCAGGGTAATGAAGTTGATCTACAATCTGGGGCCGAGGCTGAAGGCAGCTGCAATAATGGACATTCTGATACTGATAGTGATAGTGATGAAGATGAACATGATATCGGTTCTGGTGGCTGCACATTTGGTCAAGAAACAGCAGTTGATGGTCCAGAAGATATTGCCAAAGTTAATTTTACGCAAGTAAGTGTGGAAGATTTAATGTTGTTCCACTTTCCGGATGTTTCTGTGGCTTTCATGTTTTATAACTGGTATGCAAGCACCAAAGGATTTGCTGGTAGGAGGGATAGGGTAGTGAAAAATTGTAGGGGAGAAATTACACAACAGACTTTTGTGTGCCATAGACAAGGTCACAGAATGGAAAATGATAGGAATTATATTCGTAAAAGGAAAGCAAAGCCTAAATCTAGGTGTGGTTGTGATGCGAGATGTCAGGTTCATGTGGATTCCAACTGTGGACGGTGGTACATTAATTTTATATGTGATGTGCACAACCATTCATTTGTTGACAAAGTTTTTAGTGGTATGCTTCCAGCACATAGGAAAATGAGTGAGTATGACAAGTATCAAATGAGCATTATGAGAAATGTGGGGGTGAAGACAAGACATATATTTGGTTTGTTTGCTCATCAGGCAGGAGGTTACGACAGAGTAGGTTATCGTAAAGTGGACATGTATAATGAGCAACAAAGGCAAAGACAGAACAGTGGATGTGATGCAAAAAAGACGCTGGATTTTCTAAAAGAGTGTTCAATGAAAGATGATGGTTTTTATTGGAGGCACACTGTAGACAAAGACGGTGGTCTAGAGCACTTGTTCTGGTGTGATGGTACTGCTCGGAAGGATTGGTCTGTTTTTGGGGATGTGCTGGCCTTTGATGCCACATATAAAAAAAATAAATATTTGTGTCCCGTTGTGGTATTCTCTGGGGTTAATCACCATAATAAGAGTATTGTGTTTGCTGCTGCTGTTGTTATAAAGGAGACTAATGAAACATATGCCTGGTTGCTTGAAAGCTTTCTTGAGGCTATGGGTGGCAAGAGTCCAATTTCGGTGATTACGGATGGTGATAATGCTATGCGCAATGCTGTTAAAAAGGTATTTCCAAGTGCTCGTCATCGTCTTTGCGCCTGGCATTTGTTACGCAATGCTAACGCTAATGTGAAAAATCTGCAATTTGTAACAAAGTTTAAGCAATGCATGCTAGGAGACTTTGATGTTACTGAGTTTGAGCTTAGGTGGGATAAGATGGTTGCGGAGTTTGGACTTGAAAACAACATATGGATTTCTGAATTGTATTCAAAGCGGGAAATGTGGGCAACAGCCCACATTAGGGGTAATTTTTTTGCTGGATTTAGGACAACATCTCGATGCGAGGGACTACACTCAGAATTCGGTAAGTATGTAAATTTAAAGGTTAATTTGTTGGATTTTATGAAACAATTTATGCGTTGGATCAATTACATGCGGTTTAGAGAAGTTGAGGCAGATTTTACGTCATCATTTGGGGATCATGTGTTGCAATCACCATTGGTTAAGTTGGAAGAGTCTGCTGCAAAAGTGTACACGCGTGAGATATTAAATATGCTTGTCCCAATATTTAATAGGTCGTGTACATGTAGGGTGAGCGCCAGAAAACAGAGTGGTTCGTTGTTTACCTTTTGTGTTGTTAGGTATGGTAAGAAAGGTGTGAATTGGAATGTTACATTATGTCAAGCAAAGCTCGAGTTCAAGTGTTCATGTCTAAGAATGGAGTCATATGGTATTCCTTGTGAACATTTGATTTGTGTGTTTGTGTCACTTGAAATTGTTAACATGCCAGGGTGTGTCATCATGCCTAGATGGACCAAATCCGCAAAGGATTCAATTCCTGCTTTTGAAGGAAATGATAATTGTTGTAGTGATCCTGCTTCAGTTAGTGCTTTCTTGTGGATTGTCGAGTCGTGTAAGAGGATGGCTAATGCTGCAGTTCGAAGTGGAAAAAAAGAACATATAAGGACAACCGTAGACATGGTTGCAAGACACACTGCCTCGCTGGAGTCTATATGTAATGGGACTGAAACTGAGTTGACATACAAGAATCCTTATATGGAGGGTGCAGTGAAGAATCCAGTTAGAGCAAGAAGCAAAGGTTGTGCTGGTCCATCGTGTTCCCAAACCAAATTAAAAACACCAAGGAAAGTGTATGTTTGCGGTGCATGTGGGAGAAAGGGGCACAATAGAAAGTCATGTAACATTCGAAGTTCAAGTCAGGTAGTTGAAGATGAGTATGAAGACATGAGTATGGACGAGGATCTTAATGTCATAGATACGGATGTCTGA 2394 0.4014 MENNENEVIGEEEEVHSVNFVNEEQGNEVDLQSGAEAEGSCNNGHSDTDSDSDEDEHDIGSGGCTFGQETAVDGPEDIAKVNFTQVSVEDLMLFHFPDVSVAFMFYNWYASTKGFAGRRDRVVKNCRGEITQQTFVCHRQGHRMENDRNYIRKRKAKPKSRCGCDARCQVHVDSNCGRWYINFICDVHNHSFVDKVFSGMLPAHRKMSEYDKYQMSIMRNVGVKTRHIFGLFAHQAGGYDRVGYRKVDMYNEQQRQRQNSGCDAKKTLDFLKECSMKDDGFYWRHTVDKDGGLEHLFWCDGTARKDWSVFGDVLAFDATYKKNKYLCPVVVFSGVNHHNKSIVFAAAVVIKETNETYAWLLESFLEAMGGKSPISVITDGDNAMRNAVKKVFPSARHRLCAWHLLRNANANVKNLQFVTKFKQCMLGDFDVTEFELRWDKMVAEFGLENNIWISELYSKREMWATAHIRGNFFAGFRTTSRCEGLHSEFGKYVNLKVNLLDFMKQFMRWINYMRFREVEADFTSSFGDHVLQSPLVKLEESAAKVYTREILNMLVPIFNRSCTCRVSARKQSGSLFTFCVVRYGKKGVNWNVTLCQAKLEFKCSCLRMESYGIPCEHLICVFVSLEIVNMPGCVIMPRWTKSAKDSIPAFEGNDNCCSDPASVSAFLWIVESCKRMANAAVRSGKKEHIRTTVDMVARHTASLESICNGTETELTYKNPYMEGAVKNPVRARSKGCAGPSCSQTKLKTPRKVYVCGACGRKGHNRKSCNIRSSSQVVEDEYEDMSMDEDLNVIDTDV* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1848 797 Pfam FAR1 DNA-binding domain 105 193 IPR004330 -
Mtr1g1848 797 SMART 26again6 601 628 IPR006564 GO:0008270
Mtr1g1848 797 PANTHER OS02G0262500 PROTEIN 93 656 - -
Mtr1g1848 797 Pfam MULE transposase domain 313 407 IPR018289 -
Mtr1g1848 797 ProSiteProfiles Zinc finger SWIM-type profile. 588 626 IPR007527 GO:0008270
Mtr1g1848 797 Pfam SWIM zinc finger 602 623 IPR007527 GO:0008270
Mtr1g1848 797 MobiDBLite consensus disorder prediction 1 71 - -
Mtr1g1848 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 93 656 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1848 Mtr-Chr1 27401939 27404939 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g1848 MULE 6.8e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1848 - - ahf:112758016 625.935