Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1847 ATGGACATTGATCTGGAACCGATTGTTAATGATTCTTTTCGTCAATCTGGTCGTCGAAGTAATCTTTCTGAATCTGGACCGGTTCCGATGGACATTTATCGTAAAACATCAGAGAAAAAGGAGAATGTTGATGAAAAGGATTGTGGCAATGATAGAGGTTTCTATGATTGTAATATTTGTTTTGATTTGGCTAAGGAACCTGTTCTTACTTGTTGCGGTCATTTGTTTTGTTGGCCATGCTTGTATAGATGGTTGAATACAAAATCACCATTGTCGTTTAGAAGATCCTCTCTAGCTAAAGAATGTCCTGTCTGCAAGGGTGAAGTTACTGATAAGACTGTTACTCCAATTTATGGTGGTGGGAATGAAGTTGAGGTGGTTCGTGCTGAGGATTCAAGTTCTACCACTCTGCAAATCCCTCCCAGACCTAATGCAAGCGTGTTCCGAGTGTCTCGAGTGCTGAGGATTCAAGTTCTACCACTCTGCAAATCCCTCCCAGGCCTAATGCAAGGCGTGTTCCGAGTGTCTCGAGTGCTGAGGATTCAAGTTCAACATTATCTCCTTTTTCCAATCTTCGTCATCCAATAA 588 0.4184 MDIDLEPIVNDSFRQSGRRSNLSESGPVPMDIYRKTSEKKENVDEKDCGNDRGFYDCNICFDLAKEPVLTCCGHLFCWPCLYRWLNTKSPLSFRRSSLAKECPVCKGEVTDKTVTPIYGGGNEVEVVRAEDSSSTTLQIPPRPNASVFRVSRVLRIQVLPLCKSLPGLMQGVFRVSRVLRIQVQHYLLFPIFVIQ* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1847 195 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
Mtr1g1847 195 SMART ring_2 57 105 IPR001841 -
Mtr1g1847 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 119 IPR013083 -
Mtr1g1847 195 CDD RING-HC_AtRMA_like 55 107 - -
Mtr1g1847 195 Pfam Zinc finger, C3HC4 type (RING finger) 57 105 IPR018957 GO:0046872
Mtr1g1847 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 34 155 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mtr1g1847 195 ProSiteProfiles Zinc finger RING-type profile. 57 106 IPR001841 -
Mtr1g1847 195 PANTHER OS01G0830200 PROTEIN 34 155 - -
Mtr1g1847 195 SUPERFAMILY RING/U-box 56 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1847 Mtr-Chr1 27366923 27367918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1847 38 145 C3H Transcription Factor Family AT3G58030 58.333 6.17e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1847 K10666 - fve:101307075 140.584