Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1836 ATGGATCTAGGAGGCAGTTCCTTCAAAGAAGTTCTTGAACCACACCTGATATTTTCAGATTTTGAGACAGCTAAGTCTAAATCTGAGGCTAATTCCAATATTTCATTCACAAAATCAAGGACTTGTTTGGATGGAAAGAATGGAAATCATTCAAAGAATGGTGTGTATGACCTACTTGAGTGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCATCAGTGCCCAAATGGTCACACATTATGTTCAAATTGTAAGATTACGGTGCATAACCGTTGCCCAACATGTCACCGTGATCTTGGGAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCGGAATCAATGGAGCTTCCTTGCAGATATCAGAATCTAGGTTGTCATGATATATTCCCATACCACTCTAAGCTAAAGCATGAGCAAAATTGTCGATTTCGTCCATACAGTTGCCCCTATGCTGGATCAGAGTGCTCTATGATGTGTGATATTCAAGCTCTTATGAACCATCTCAAGGATGATCACAAGGTCGACGTACATGATGGATTCACCTTTAACCATCGATATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACCGTTTTCAATTGTTTTGGAAAGCATTTTTGCTTGCACTTTGAGGCGTTTCTGCTTGGCACCGCTCCAGTTTACATGGCATTTTTACGATTTTTAGGTGACGAAAAAGAAGCAAAGAAGTTTAGGTATAGCTTAGAGGTTGGTGCAAATAGCCGCAAACTTATATGGCAAGGAATTCCAAGGAGTATTCGCGAGAGTCATAGAAAAGTTCGTGACAGCCAAGATGGACTCATCATTCAGAGAAACCTAGCTCTTTATTTTTCCGGTGGCGATAAACAACAATTAAAGTTGAGGGTCACTGGTCGTATATGGAAAGAAGAATGA 930 0.4022 MDLGGSSFKEVLEPHLIFSDFETAKSKSEANSNISFTKSRTCLDGKNGNHSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSNCKITVHNRCPTCHRDLGNIRCLALEKVAESMELPCRYQNLGCHDIFPYHSKLKHEQNCRFRPYSCPYAGSECSMMCDIQALMNHLKDDHKVDVHDGFTFNHRYVKSNPHEVENATWMLTVFNCFGKHFCLHFEAFLLGTAPVYMAFLRFLGDEKEAKKFRYSLEVGANSRKLIWQGIPRSIRESHRKVRDSQDGLIIQRNLALYFSGGDKQQLKLRVTGRIWKEE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1836 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 6 309 - -
Mtr1g1836 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 165 IPR013083 -
Mtr1g1836 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 6 309 - -
Mtr1g1836 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr1g1836 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Mtr1g1836 309 SUPERFAMILY RING/U-box 55 101 - -
Mtr1g1836 309 CDD RING-HC_SIAHs 59 96 - -
Mtr1g1836 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 302 IPR008974 GO:0005515
Mtr1g1836 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 113 IPR013083 -
Mtr1g1836 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Mtr1g1836 309 SUPERFAMILY TRAF domain-like 117 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1836 Mtr-Chr1 27196380 27200668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1836 1 309 C3H Transcription Factor Family AT2G41980 77.670 1.44e-179 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1836 K04506 - gmx:100813966 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1836 1 27196380 27200668 Mtr1g1836 1 27196380 27200668 ECH