Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1832 ATGGAACTTGCTTTGAGCTTAGGTGACACACCAAAATTACCTCTCTCTTTTCTTGACAAACCCAACAAAGATCCATTACCAAGTTTCTTCTCAACACAACAAGGAAAAACCTCAGAAGAAGAAAAAAGAGGTTCTTCAGATCCACCTATTCAACTAGACCTTCTTCCTTTCACTCCTGTTCTTAGATCTCCTCACCCTTCTTCTCACCTTCCCATTCCTTGGCTCACCCAACCATGTGGACCGGTGAGGGAGCTAGACGTGAACCGTTTCCCGGCGGCGACGACGGAAGACGTCGACGACGGCACCTCATTGTCATCCCCCAGCAGTTCTGTGTCACCATTTGCAATGGATTTCAGTATGAGGAATAATAACAATGCTGAATATGGAGGAAGAAATAAGAGAGAAAATGAAGGTGAAGCTGAAAGAGGAAGTGATGATGATGAAAATGGGTCAACTAGGAAGAAACTAAGACTCTCTAAAGATCAATCTGCTTTTCTTGAAGAAAGTTTCAAAGAACACACCACTCTTAATCCTAAGCAAAAACTTGCACTTGCAAAACAGTTGAATCTTAGTCCTCGTCAAGTTGAAGTTTGGTTTCAAAATAGAAGAGCAAGGACAAAGTTAAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGAAGATTACAAAAGGAACTTCAAGAGCTTAGAGCTTTGAAAACTACTCAACCATTCTACATGCAACTTCCAGCTACCACTCTCACTATGTGTCCTTCTTGTGAACGTGTAGCTACAAACCCTTGCAACAACCAAACAAACACCAACAAGTCAAGATTCTCTAATGCTCAAGCCCAAGCCCAAGCCCATCAGATTTCTTCATGA 891 0.4153 MELALSLGDTPKLPLSFLDKPNKDPLPSFFSTQQGKTSEEEKRGSSDPPIQLDLLPFTPVLRSPHPSSHLPIPWLTQPCGPVRELDVNRFPAATTEDVDDGTSLSSPSSSVSPFAMDFSMRNNNNAEYGGRNKRENEGEAERGSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTQPFYMQLPATTLTMCPSCERVATNPCNNQTNTNKSRFSNAQAQAQAHQISS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1832 296 MobiDBLite consensus disorder prediction 94 158 - -
Mtr1g1832 296 Gene3D - 157 207 - -
Mtr1g1832 296 Coils Coil 215 245 - -
Mtr1g1832 296 CDD homeodomain 153 210 IPR001356 GO:0003677
Mtr1g1832 296 SUPERFAMILY Homeodomain-like 146 210 IPR009057 -
Mtr1g1832 296 CDD bZIP 202 241 - -
Mtr1g1832 296 Pfam Homeodomain 153 207 IPR001356 GO:0003677
Mtr1g1832 296 PANTHER - 5 287 - -
Mtr1g1832 296 MobiDBLite consensus disorder prediction 1 78 - -
Mtr1g1832 296 ProSitePatterns 'Homeobox' domain signature. 184 207 IPR017970 GO:0000981|GO:0006355
Mtr1g1832 296 Pfam Homeobox associated leucine zipper 209 243 IPR003106 GO:0006355|GO:0043565
Mtr1g1832 296 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 287 - -
Mtr1g1832 296 MobiDBLite consensus disorder prediction 128 158 - -
Mtr1g1832 296 MobiDBLite consensus disorder prediction 274 296 - -
Mtr1g1832 296 SMART HOX_1 151 213 IPR001356 GO:0003677
Mtr1g1832 296 MobiDBLite consensus disorder prediction 98 127 - -
Mtr1g1832 296 ProSiteProfiles 'Homeobox' domain profile. 149 209 IPR001356 GO:0003677
Mtr1g1832 296 SMART halz 209 252 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1832 Mtr-Chr1 27065547 27067874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1832 49 267 Homeobox Transcription Factor Family AT5G47370 55.411 8.37e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr1g1832 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1832 K09338 - gmx:100776113 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1832 1 27065547 27067874 Mtr1g1832 1 27065547 27067874 ECH
Mtr7g2733 7 44000098 44002048 Mtr1g1832 1 27065547 27067874 PCT