Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g1831 | ATGGGTCGTCGCAAAATTAAAATAGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACTTTCTCAAAGCGTCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATTTTATGCGGAGTTGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATTTTGTTGCTGCCAAGTATTTGAAACTAAAGCCTAAACGCATGAATTCCATAGGAAACTCCTCTTCTGATTCTCCCAATATGGAAAAATTGAATCTAGAACATATTGAGGTGTTAGGACAAGTTCAAGAAGGTGAAAAGCAAGCTGAGAATCATGATGAGATTCCGAAGCAAAACAACGTGACAAAACTCCTCGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTTTGATGCTTCTAGCTCAAGATCCAGTTGTGGGAATAAAAGAATAA | 510 | 0.3902 | MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSILCGVEVAIVVFSPGNNPYSFGHPGVDFVAAKYLKLKPKRMNSIGNSSSDSPNMEKLNLEHIEVLGQVQEGEKQAENHDEIPKQNNVTKLLELKELRDSYKELQDCIKLRLSDIEISECLMLLAQDPVVGIKE* | 170 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g1831 | 169 | Gene3D | - | 14 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Mtr1g1831 | 169 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr1g1831 | 169 | SUPERFAMILY | SRF-like | 1 | 75 | IPR036879 | GO:0003677|GO:0046983 | |
Mtr1g1831 | 169 | CDD | MADS | 2 | 60 | - | - | |
Mtr1g1831 | 169 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr1g1831 | 169 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr1g1831 | 169 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr1g1831 | 169 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 | 2 | 168 | - | - | |
Mtr1g1831 | 169 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr1g1831 | 169 | PANTHER | MADS BOX PROTEIN | 2 | 168 | - | - | |
Mtr1g1831 | 169 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g1831 | Mtr-Chr1 | 27040479 | 27041305 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g1831 | 1 | 161 | Type I MADS-box Gene Family | AT2G34440 | 43.103 | 4.11e-36 | 121 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Mtr1g1831 | SRF-TF | 2.1e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g1831 | - | - | mtr:MTR_1g054265 | 335.495 |