Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1831 ATGGGTCGTCGCAAAATTAAAATAGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACTTTCTCAAAGCGTCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATTTTATGCGGAGTTGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATTTTGTTGCTGCCAAGTATTTGAAACTAAAGCCTAAACGCATGAATTCCATAGGAAACTCCTCTTCTGATTCTCCCAATATGGAAAAATTGAATCTAGAACATATTGAGGTGTTAGGACAAGTTCAAGAAGGTGAAAAGCAAGCTGAGAATCATGATGAGATTCCGAAGCAAAACAACGTGACAAAACTCCTCGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTTTGATGCTTCTAGCTCAAGATCCAGTTGTGGGAATAAAAGAATAA 510 0.3902 MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSILCGVEVAIVVFSPGNNPYSFGHPGVDFVAAKYLKLKPKRMNSIGNSSSDSPNMEKLNLEHIEVLGQVQEGEKQAENHDEIPKQNNVTKLLELKELRDSYKELQDCIKLRLSDIEISECLMLLAQDPVVGIKE* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1831 169 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Mtr1g1831 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr1g1831 169 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Mtr1g1831 169 CDD MADS 2 60 - -
Mtr1g1831 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g1831 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g1831 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr1g1831 169 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 168 - -
Mtr1g1831 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g1831 169 PANTHER MADS BOX PROTEIN 2 168 - -
Mtr1g1831 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1831 Mtr-Chr1 27040479 27041305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1831 1 161 Type I MADS-box Gene Family AT2G34440 43.103 4.11e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g1831 SRF-TF 2.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1831 - - mtr:MTR_1g054265 335.495