Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1830 ATGGGTCGTCGCAAAATTAAAATTGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACATTCTCAAAACGTCGGACTGACTTATTTAAGAAAGCAAATGAATTGTCGATTTTGTGCGGAGCAGAAGTGGCTATTGTTGTGTTCTCTCCAGGTGATAATCCTTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGGCAAGTATCTTGAACTAAAGCCTAAACGTAGGAACTCCGAAGGAAACCCCTCTTCTGATTCTTCCAATATGGAAAAATTGAATCAAGAACTTGCTGAGCTGTTGGCACAAATCCAAGAAGGTGAAAAGAAAGTTGAGACTCATGATGAGATTCTGAAGCAAAATGATGTGGCAAAACTCTCTGAGCTTAAAGAATTGAGAGATTCGTACAAAGATCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATTGAGATATCAGAATGTATGATGCTTCTAGCTCAGGAGGATCCAGTGGTGGGAAGAAAAGCAAAATTGTCAAAAAAGAAAAGAAGAAAAAATTGA 543 0.3923 MGRRKIKIERVKDSNTRQVTFSKRRTDLFKKANELSILCGAEVAIVVFSPGDNPYSFGHPGVDVVAGKYLELKPKRRNSEGNPSSDSSNMEKLNQELAELLAQIQEGEKKVETHDEILKQNDVAKLSELKELRDSYKDLQDCIKLRLSDIEISECMMLLAQEDPVVGRKAKLSKKKRRKN* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1830 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g1830 180 PANTHER MADS BOX PROTEIN 2 169 - -
Mtr1g1830 180 Coils Coil 90 117 - -
Mtr1g1830 180 Gene3D - 13 124 IPR036879 GO:0003677|GO:0046983
Mtr1g1830 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g1830 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g1830 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr1g1830 180 CDD MADS 2 60 - -
Mtr1g1830 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 169 - -
Mtr1g1830 180 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Mtr1g1830 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr1g1830 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1830 Mtr-Chr1 27026500 27027042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1830 1 161 Type I MADS-box Gene Family AT2G34440 41.379 1.86e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g1830 SRF-TF 9.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1830 - - mtr:MTR_1g054265 273.863