Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1828 ATGGAGGAACAAGCATCTCGTAGAATTGCGATGGATATTGATTTGAATCTGGAACCAAATCCAGATCAATTATCCTATGCTATCGGTGCTATCAATTTGAATGATGTGATCAATCCCCCTCTTGATAGAAATAGTAATCTTCTTGATCGTCATACCTGGGAAAATGTTTCCATGGAATTGGATTGGTTTTTGGGTATTTCTCGCAATTCAAGTGTCGAAAGAATTGCAGAAATACCTCAACCACAACAACCAAGCCTTATCGCACTAAGTGAAATTAGCAATGTTGGTGTTGCATTGGATAAGAGCAAGACATCGGAGAAAAAGGAGAATGTTGATAACGGTTGTGGTAGTAAAGGAGGTTTCTATGATTGTAATATTTGTTTAGGTTTGGCTAAGGATCCTGTTGTGACTCGTTGCGGTCATTTGTTCTGTTGGCCATGTTTATATAGATGGTTGCATTCGGGATCATACGGCAATAAAGAATGTCCTGTTTGCAAGGGGGAAGTTAAGGATAAGAAGGTTATTCCTATATATGGTGGTGGGAATGATGTCGAGGTTGGTCACGAGGATTCAAGCTCCACTCTGCAAATCCCTCGCAGACCTAATGCAAGGCGGAAGGACTCCAATGCAAGGCAATCAAGAGAGGGGAGAGTGAGGCATCTAGGACGGGACATAATGACTATTCAGTAG 690 0.4159 MEEQASRRIAMDIDLNLEPNPDQLSYAIGAINLNDVINPPLDRNSNLLDRHTWENVSMELDWFLGISRNSSVERIAEIPQPQQPSLIALSEISNVGVALDKSKTSEKKENVDNGCGSKGGFYDCNICLGLAKDPVVTRCGHLFCWPCLYRWLHSGSYGNKECPVCKGEVKDKKVIPIYGGGNDVEVGHEDSSSTLQIPRRPNARRKDSNARQSREGRVRHLGRDIMTIQ* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1828 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 219 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mtr1g1828 229 ProSitePatterns Zinc finger RING-type signature. 139 148 IPR017907 -
Mtr1g1828 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 179 IPR013083 -
Mtr1g1828 229 MobiDBLite consensus disorder prediction 185 229 - -
Mtr1g1828 229 SMART ring_2 124 165 IPR001841 -
Mtr1g1828 229 PANTHER OS01G0830200 PROTEIN 19 219 - -
Mtr1g1828 229 CDD RING-HC_AtRMA_like 122 167 - -
Mtr1g1828 229 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Mtr1g1828 229 MobiDBLite consensus disorder prediction 200 222 - -
Mtr1g1828 229 SUPERFAMILY RING/U-box 121 178 - -
Mtr1g1828 229 Pfam Zinc finger, C3HC4 type (RING finger) 124 165 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1828 Mtr-Chr1 26959969 26960969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1828 10 208 C3H Transcription Factor Family AT3G58030 37.220 1.02e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1828 K10666 - twl:120013257 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1828 1 26959969 26960969 Mtr1g1828 1 26959969 26960969 ECH