Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1807 ATGGATGCCCGCAAACGAGGGAGGGTTGATGCTGCTCTTAACGGCTCCGTCAAGAAAACCAAACAAGAAATGGACTCAACTGGTGTAGGAAGCAAAACGAAGCCTTGTACCAAGTTTTTCAGCATTGCTGGCTGTCCATTTGGTGAGGGTTGTCACTTCTCGCATCATGTTCCCGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTAAAACCTGCTGCACCTCCTAGAAATGTTGCCGCCCCACCGCCAGTCTCTAACAATGGTTCTGCACAACATGCTGTTAAAAGCCGCATATGTAACAAGTTTAATTCTCTTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTCGGTAAACCTTTTGCTCCATCAGTTGATGATCACCGTCTAATGGCACCTACAAATGTTGGTCGTATGCCTGGTCGAGTTGAGGCTCCTTCTGGTCTGGGCGGTACTAGCTTTGGTGCCAATTCCACTGCCAAGATCAGTGTAGAAGCTTCTTTGGCTGGAGCTATCATTGGAAAGGGTGGTGTGCACTCGAAGCAGATATGTCGCCAAACAGGAGTCAAATTTTCAATTCGAGACCATGAAACTGACCCAAATCTTAGAAACATTGAACTTGAGGGAACGTTTGATCAAATTGCACAAGCAAGTAACATGGTAAAAGATTTACTTTTGACTCTATCAGTGTCTGCCCCACCTAAATCCACCCCGGGTGCTCCTGCTGGTGGTGGCCCAGCTGCACCTGGAAGAAACATCAAGACCAAGCTGTGTGAGAATTTTGCTAAAGGATCCTGCACATTTGGAGAAAGATGTCACTTTGCCCATGGAGCTGCTGAATTGCGAAAGCTAGGAGTCTAA 882 0.4683 MDARKRGRVDAALNGSVKKTKQEMDSTGVGSKTKPCTKFFSIAGCPFGEGCHFSHHVPGGYNAVAQMMNLKPAAPPRNVAAPPPVSNNGSAQHAVKSRICNKFNSLEGCKFGDKCHFAHGEWELGKPFAPSVDDHRLMAPTNVGRMPGRVEAPSGLGGTSFGANSTAKISVEASLAGAIIGKGGVHSKQICRQTGVKFSIRDHETDPNLRNIELEGTFDQIAQASNMVKDLLLTLSVSAPPKSTPGAPAGGGPAAPGRNIKTKLCENFAKGSCTFGERCHFAHGAAELRKLGV* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1807 293 ProSiteProfiles Type-1 KH domain profile. 164 228 - -
Mtr1g1807 293 SMART c3hfinal6 96 121 IPR000571 GO:0046872
Mtr1g1807 293 SMART c3hfinal6 30 57 IPR000571 GO:0046872
Mtr1g1807 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Mtr1g1807 293 Pfam KH domain 167 229 IPR004088 GO:0003723
Mtr1g1807 293 SUPERFAMILY CCCH zinc finger 31 57 IPR036855 GO:0046872
Mtr1g1807 293 Pfam RNA-binding, Nab2-type zinc finger 100 120 - -
Mtr1g1807 293 Pfam RNA-binding, Nab2-type zinc finger 35 55 - -
Mtr1g1807 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Mtr1g1807 293 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 292 - -
Mtr1g1807 293 MobiDBLite consensus disorder prediction 1 28 - -
Mtr1g1807 293 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 292 - -
Mtr1g1807 293 SMART kh_6 163 233 IPR004087 GO:0003676
Mtr1g1807 293 ProSiteProfiles Zinc finger C3H1-type profile. 30 58 IPR000571 GO:0046872
Mtr1g1807 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 284 IPR000571 GO:0046872
Mtr1g1807 293 Gene3D K Homology domain, type 1 160 258 IPR036612 GO:0003723
Mtr1g1807 293 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Mtr1g1807 293 SUPERFAMILY CCCH zinc finger 94 125 IPR036855 GO:0046872
Mtr1g1807 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 160 234 IPR036612 GO:0003723
Mtr1g1807 293 CDD KH-I 166 229 - -
Mtr1g1807 293 SUPERFAMILY CCCH zinc finger 259 289 IPR036855 GO:0046872
Mtr1g1807 293 Gene3D - 259 290 - -
Mtr1g1807 293 Gene3D - 88 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1807 Mtr-Chr1 26636741 26640666 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr1g1807 KH_1 3.3e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1807 - - gmx:100817463 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1807 1 26636741 26640666 Mtr1g1807 1 26636741 26640666 ECH
Mtr7g2715 7 43842694 43846896 Mtr1g1807 1 26636741 26640666 PCT