Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1806 ATGGCGTCGAAAGGTCCAAGGTCTAAGATTGATCCCGAGTATAAAGTTAAACGGCATAAGGCTGTTGAAGCTTCAAGGGAGCCTAGACGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTGTGGCTATCAAAGGACTTCGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAAAGCCAGCAAAGAAGGCATGTTAGATCCAGCTGCAAGGGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTTTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTTGTGGATGCTAATGCACCAGCAGAGAAAAATTCTGCAGAGCATCAGATGAGTTTTCAATGCAAAGATATAGGCGGAGACATTATCAATGAACCTAAGGAAGCTAATGTTGCAGAGTATAAATCCGATGCACCTGATCATGATGAAGAATATGATGTACAATCTGACGATGTATCGGATGATGATGAGCAAACGCTCGAGGAAGATGAGGCTCTTATAACTAAAGAAGAACGGCAAGAGGAATTGGCAGCTTTGCACAGCGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCTGGAGATAAAGGAGAATTGGCAAGGCAGGAAAGTAGTCCAGAGAGTAGTGAAGATGGTGGACAGATAGTTAGAACTGGTGATCCTGATGGCCAGGAAGAACTTGCATCAGAAAATGGAGATCATATATCTATCAGTGAAATATGTACAAACGACTCCAGCACGGTCCTCGGTCGACGTTGTGATGACAGTAACGGTGATGTGGCTACACCAACAAATAATCTATCTCAAAATGAGGTTCATCAATCTGAAAATCTCAAAGAGGTTCCCAGTGAGGCAGCCAATGAAAATGTTCCATTTGATTTTTCTGACGAAGAGGAAGACGGCGACTTTTTGTTTGGCACAGAGGATAAGGACGATGAAACAACCTTATCCGAGGAAGAAAAACTGGACAGAGTTGATGCAATTGATCCAAAGGATGAGATTGCATTACTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAAGGACCTGAGTGATGATTGGGATCAGGAAGATGAGTCAGATTGTGCTTCTGCTTCATCAGAAGACCAGCGGAATTCACCAGTCCATGATGATGCTAAGCAGACAGATCCTGATATTTCTGTGGATGAAGATATGAATTCCAGTGAGAAACTGGCTACTGTACAGACACAGGCAGAAGAACAGGGGGAAGCACCTTGTGAAAATTCAGAGGAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGTACAACCAACTGGAAACACTTTCTCCACAACTAAAGTGCGTACAAAATTTCCCTTTCTACTCAAGTACTCTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTTACAATGTATGAAAAAAAGCTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACCATTATGACTATAGCTTTGCTTGCACATCTTGCCTGCGAAAAGGGGATTTGGGGTCCACATCTAATTGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCGTTCAAAATTTTGACCTATTTCGGAAGCGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTGTGCATAACAACTTACAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGCTGAATTTCAATTCAAAACGACGAATTCTGTTGACCGGTACACCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTTGTAATCCTATATCAGGAATGGTCGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTAGATCGCCTGCATAATGTCCTTCGTCCGTTCTTACTCCGTCGATTGAAGAGAGATGTAGAAAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGTAGGCTGTCAAAGAGGCAGAGGAATTTGTACGAAGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCGAATGCCAATTTTTTTGGGATGATTAGTATCATCATGCAACTTCGCAAGGTTTGTAATCATCCTGACCTATTTGAGGGCCGTCCAATCGTCAGTTCTTTTGATATGTGTGGGATTCATACTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGCTCCTTTTCTACAGTCGACTTAGAAGGTTTGGGTCTTCTATTTACTCATCTTGACTATAGCATGACATCTTGGGAGAGTGATGAAGTGCAAGCTATTGAGACCCCTGCAACTTTAATTATGGAACGCACTGATAGGGCTGACCTGGAAGTAATTAAGCCCGGACTGAAATGTCAGAAAAAGCAGTTAGGAACAAACATTTTTGAAGAGATTCAAAAGGCAATTTGGGAAGAGAGGATAAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGACCCATCTACTCAACGACTCTAAGGGACCTTGTTACCATAAGGCATCCTGTATATGATATTCATCAAAAGAAGGCAAACCCTGTTTCATACTTGTTCCCATCAAAACTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAGAGGATGATTGATGTGGTTGAAAGTTTCATGTTTGCGATTCCTGCTGCCCGAGCATCCCCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACAACAGTGTTTCTGCACCCATCTTACAAGCAGCAATGCTCTGATATTCTGTCACCACTATTGTCACCCATCAGGCCCGCAATTGTTCGTCGGCAAGTATATTTCCCAGACAGGCGACTTATACAATTCGACTGTGGAAAATTGCAGGAGCTAGCGATTTTGCTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAAATGACTAAGATGCTTGACATATTAGAAGCCTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACCCAACCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATCGGTGCCACAGAATTGGCCAGACGCGTGAAGTCCATATATATCGATTGATTAGTGAGAGCACCATTGAGGAAAATATTTTGAAGAAAGCAAAGCAAAAGCGCGCACTTGATGATCTGGTTATACAGAGTGGGGGTTATAATACTGAGTTCTTTAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTCTCAATTAAAGATACGCCGAAGGAGAAAAACCAGAACAGTGGAGAAGTTTCTGTAACTAATGCAGATGTAGATGCTGCATTAAAACATGTCGAAGATGAGGCAGATTATATGGCCCTGAAGACACGTGAACTGGAAGAAGCTGTGGATAACCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGAGTATGTAAATGAGGATGATGAGCCTCAAGAGTTGGGTGAATCTGTCTCCAATTTGAATAAAGAGAATGAATTAATGTTAAATGGAGGTGATCCTAACGAAGATAAACTACCCGCTGTTGTTGCCAAGGATGATGATGTTGACATGCTGGCAGATGTCAAACAGATGGCGGAAGCTGCAGCTGCAGCTGGACAGGCTTTATCAGCCTTTGAGAATGAGCTACGCCCTATTGACCGATACGCCATTCGTTTTCTAGAGCTGTGGGATCCAATTATAGATAAGGCAGCCTTGGAATCTGAAGCCAGGATTGAGGACACTGAGTGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCCGAAATTGACGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACAACGGCTTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAATATGAAGCTAAACTGAAAGAGGAAGCTGAAGAAGAGAAAAACAGGACTCAAGCACCAAGTGAGTCAAAGCCCAAGCCTAAAAAGAAACCAAAGAAAACAAAGTTCAAATCTCTGAAGAAAGGATCTCTAACCTCTGGTGTAAGAACTGTGAAAGACGAGCTACGAGCAGTGCCAATGGTCATAGATGATGATGATGTTGTCACTAGTCCTGATTTTGTGTCTCCAAGTTCAAGTATGCATAAAAAACGCAAGAAGTCTAAATTAACAGCTGATGGTGAAGAAGAAAAGAGATCTAAGAAGACCAAAAAGTCCAAGAGGGATCTTCTTGACATCTATGATTCAGATTTAGAATCCAACTCATTAGATATGCAGGATGAACATGCAGAATCAGATCCATATAAAAGTCTGGTTGTGTCGGAACAGAAAACAGTTGGCAGGAGTAGGATGGGAGGAAAAATAACCATCACTCCAATGCCTGTGAAACGTGTGTTTATAATAAAATCAGAAAAACTGAAGAAGGGAAATATTTGGTACAAAGATTGTATTCCATCAGCTGATTTTTGGTTGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTCATGAATATGGTCCTAACTGGAGCTTTGTTAGTGAAATCCTTTATAGCATGACTGCTGGGGGGGCATATAGGGGGAGATTTCGTCATCCTGTCCATTGTTGTGAGAGGTTCAGAGAATTATTCCAAAAATACATCTTGTTCTCTATGGACAATGCAAATCATGAGAAAATCAACTCTACAACCTCTGGAAAGGCTCTTAAAGTAACAGAGGATAACATTCGGATATTGTTAGATGTTGCTTCTGAGCAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTTTGCGTTGCTTTCTTCTGTCTGGAAGGTGGGGTCACGTGTTGACCGCAGGCAAAATCCACCTGCCACTTGCAATGGTCTCTATTTCGATCAGAGTTTTTTCACTTCAATTGGCCAGCACTCACAAAATCCCCCAAACAAACCCTATGACAGGATGACGTTTGCTAATTCAGCCCAGAGCAAGAAGTTAATTGCAGCTGCACTGGATGACATGAGAAGTAGGCCAGAGAATGACAAAATATTCCTCTCTAACCAGGGTGAAGACATGCCGGTGAGTGCAGATCAGGTGGATATAACTCTGGAGTTCCCGAAAGAGGAAAGTGATTCCTTATCCTCATTTCCATCTGTTATAAAGTTATCAATAAAAGGGGATGAAGCGCCACCGTCTTTAAAGCACACAAGAGATGATCATCTTAAAATGTGTTATTCTGCTGCTGAGAATCGTTTCAGGGATATAGCAAAAGCTTGTGAAGAAGACAGTTCTGGATGGGCTTCACCGACAAATGATGCAAGGTCTCGACCTGGTTCCAAGATACAATCTTCTGGAAAGCAAAGGTCTTCCATCTCCGACATTACTAAGCTGTCAAGGTCAAAGACCAAAAGAGCTTCAGTGGATTCTAATGAAATGCATCGCCATCAGGCTGAGTTATTGCCGCCAGTGCCATCGCTTCATGAACTGACACTGGATCTCCCTTCATCCACTATGGACGAATTTGGATTTAACATGGATAGCAATTTCACCTTTGATTTGAATGAGGAAAGTTCATTGGAAAGGGAAAATTTTGGAGTGGTCCCCCATGATTATGTAGCTGAGTTAATCCCAGGCCTTGATGATTGTATAGCATTCTCTGAATATACTGATATTAGATAA 6138 0.4164 MASKGPRSKIDPEYKVKRHKAVEASREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALKASKEGMLDPAARGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDANAPAEKNSAEHQMSFQCKDIGGDIINEPKEANVAEYKSDAPDHDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALHSEMDLPIEELLKRYAGDKGELARQESSPESSEDGGQIVRTGDPDGQEELASENGDHISISEICTNDSSTVLGRRCDDSNGDVATPTNNLSQNEVHQSENLKEVPSEAANENVPFDFSDEEEDGDFLFGTEDKDDETTLSEEEKLDRVDAIDPKDEIALLQKESDMPVEELLARYKKDLSDDWDQEDESDCASASSEDQRNSPVHDDAKQTDPDISVDEDMNSSEKLATVQTQAEEQGEAPCENSEERESEDIIADAAAAARSVQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIHTQLSSSICSMLLPSSFSTVDLEGLGLLFTHLDYSMTSWESDEVQAIETPATLIMERTDRADLEVIKPGLKCQKKQLGTNIFEEIQKAIWEERIREAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTIRHPVYDIHQKKANPVSYLFPSKLADIVLSPVERFQRMIDVVESFMFAIPAARASPPVCWCSKSETTVFLHPSYKQQCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKDTPKEKNQNSGEVSVTNADVDAALKHVEDEADYMALKTRELEEAVDNQEFTEEASGRLEEDEYVNEDDEPQELGESVSNLNKENELMLNGGDPNEDKLPAVVAKDDDVDMLADVKQMAEAAAAAGQALSAFENELRPIDRYAIRFLELWDPIIDKAALESEARIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKNRTQAPSESKPKPKKKPKKTKFKSLKKGSLTSGVRTVKDELRAVPMVIDDDDVVTSPDFVSPSSSMHKKRKKSKLTADGEEEKRSKKTKKSKRDLLDIYDSDLESNSLDMQDEHAESDPYKSLVVSEQKTVGRSRMGGKITITPMPVKRVFIIKSEKLKKGNIWYKDCIPSADFWLPQEDAILCAVVHEYGPNWSFVSEILYSMTAGGAYRGRFRHPVHCCERFRELFQKYILFSMDNANHEKINSTTSGKALKVTEDNIRILLDVASEQANRELLLQKHFFALLSSVWKVGSRVDRRQNPPATCNGLYFDQSFFTSIGQHSQNPPNKPYDRMTFANSAQSKKLIAAALDDMRSRPENDKIFLSNQGEDMPVSADQVDITLEFPKEESDSLSSFPSVIKLSIKGDEAPPSLKHTRDDHLKMCYSAAENRFRDIAKACEEDSSGWASPTNDARSRPGSKIQSSGKQRSSISDITKLSRSKTKRASVDSNEMHRHQAELLPPVPSLHELTLDLPSSTMDEFGFNMDSNFTFDLNEESSLERENFGVVPHDYVAELIPGLDDCIAFSEYTDIR* 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1806 2045 SMART helicmild6 1093 1176 IPR001650 -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 1527 1567 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 413 485 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 348 373 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 456 473 - -
Mtr1g1806 2045 Pfam Helicase conserved C-terminal domain 1066 1176 IPR001650 -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 1950 1966 - -
Mtr1g1806 2045 Coils Coil 1454 1478 - -
Mtr1g1806 2045 SMART ultradead3 518 711 IPR014001 -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 198 219 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 8 32 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 183 197 - -
Mtr1g1806 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 1240 IPR027417 -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 1298 1312 - -
Mtr1g1806 2045 Pfam SNF2-related domain 539 811 IPR000330 GO:0005524|GO:0140658
Mtr1g1806 2045 Coils Coil 1403 1423 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 1285 1313 - -
Mtr1g1806 2045 PANTHER HELICASE SRCAP 13 1938 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 309 387 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 1 32 - -
Mtr1g1806 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 744 IPR027417 -
Mtr1g1806 2045 Pfam HSA domain 27 92 IPR014012 -
Mtr1g1806 2045 SMART bromneu2 23 95 IPR014012 -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 1469 1502 - -
Mtr1g1806 2045 Gene3D - 1647 1707 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 434 455 - -
Mtr1g1806 2045 Pfam Myb-like DNA-binding domain 1650 1705 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 179 292 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 220 262 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 309 339 - -
Mtr1g1806 2045 Coils Coil 76 96 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 1913 1966 - -
Mtr1g1806 2045 Gene3D - 1034 1282 IPR027417 -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 1469 1486 - -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 1548 1567 - -
Mtr1g1806 2045 CDD DEXQc_SRCAP 522 744 - -
Mtr1g1806 2045 Gene3D - 768 847 - -
Mtr1g1806 2045 ProSiteProfiles HSA domain profile. 22 95 IPR014012 -
Mtr1g1806 2045 CDD SF2_C_SNF 1052 1187 - -
Mtr1g1806 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 699 IPR014001 -
Mtr1g1806 2045 MobiDBLite consensus disorder prediction 1917 1949 - -
Mtr1g1806 2045 Gene3D - 491 767 IPR038718 -
Mtr1g1806 2045 PANTHER HELICASE SRCAP-RELATED 13 1938 - -
Mtr1g1806 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1067 1217 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1806 Mtr-Chr1 26613976 26632288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1806 542 814 RAD5 or RAD16-like Gene Family AT5G43530 30.124 3.97e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr1g1806 SNF2_N 8e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1806 - - aprc:113871102 3122.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1806 1 26613976 26632288 Mtr1g1806 1 26613976 26632288 ECH