Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1801 ATGAATGAGAATAAGATTGATTATTTAGGAAGTGTTCAACAAAACCATATACTAAATGGTGATTTTAATTCAGAGTTTGGAAATTGTTCTAGTCAATATTTTGATATGAGAAATGCTTCAAATATTGGAAATTTTAGTCAACCATTGGTTATGGAACAATCATCATACATAGTCCAAAGTCAAAACCAAAACCAAGGACAAGGAAAATCATCATCATCATCATCATCAAGCACAATTATGAGAAGTTTTGAGTCACCAACTTCAGCTTTTTATGCAACAGAAATTTGCATGGGTTTTCCACAATATGATTACCAAGTTGGAAATGAAAGTAGTAACCCTCTTTTGATATCTCAATTTTCTAATAAGGTTAATGATTTGGAATTTCCTTTGTATCAAAGGGAAAATCATTACCTTGATTCAACAAATCAATCTAGCCATAATTTTGAGTTGTCAAATTTAAACACTTTGCAACCAATTCTTAGATCTCCGGAAAAATCGAATAGAATCGAATGTGGGAATTTTCCTAGAGAAAATTATCTCTCAGTTGAGCAACATAAATTCTTCATTGATGATGCTGCATCAGTTAGTATGAGTCCATTAATTCATTCTAATGGAAATCAGGATCATAAAGTTTCTTGTGGTTCATATGATTTTCCGGGTTCACAGCTGAATTTCTCTTATCAGCAAGATAAACTGTCTCCAACTATGTCAACAGGAAATGTCTCAACTAATTCCGGAAACCCTGCTTGTAATGGATCATCGGTTTCTAGTAAAACACGAATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGCGGTGCCGAGAAGGCAACACCGAAAGCGATATTAAGGCTGATGGATTCAGACGGATTGACAATCTTCCATGTTAAAAGTCATTTGCAGAAGTATAGAATTGCCAAATACATGCCGGAACCAGCTCAAGGAAAATCCGAGAAAAGAACTCATGTAGAGAATGTGAACCTTGATGCGAAATCTGGTTTGCAAATTAGAGAGGCACTTCAGCTGCAGCTAGACGTTCAGAGGCGTCTTCATGAACAACTAGAGATACAGCGAAAATTACAGTTGCGAATAGAGGAACAAGGAAAGCAGTTGAAGATGATGTTTGACCAACAACAGAAGACAAATAGTACTTGCCAATTGAACACTCAAAATTTGGACAATACACCAAACAATGATACACCAATTAGTCCTAAAGATATTGAGGTTACCATTTTTGAAGGGTCTCATTCTCAATACTCATAA 1284 0.3551 MNENKIDYLGSVQQNHILNGDFNSEFGNCSSQYFDMRNASNIGNFSQPLVMEQSSYIVQSQNQNQGQGKSSSSSSSSTIMRSFESPTSAFYATEICMGFPQYDYQVGNESSNPLLISQFSNKVNDLEFPLYQRENHYLDSTNQSSHNFELSNLNTLQPILRSPEKSNRIECGNFPRENYLSVEQHKFFIDDAASVSMSPLIHSNGNQDHKVSCGSYDFPGSQLNFSYQQDKLSPTMSTGNVSTNSGNPACNGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRIAKYMPEPAQGKSEKRTHVENVNLDAKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTNSTCQLNTQNLDNTPNNDTPISPKDIEVTIFEGSHSQYS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1801 427 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Mtr1g1801 427 Pfam Myb-like DNA-binding domain 262 311 IPR001005 -
Mtr1g1801 427 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
Mtr1g1801 427 MobiDBLite consensus disorder prediction 59 79 - -
Mtr1g1801 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 315 IPR017930 -
Mtr1g1801 427 Pfam MYB-CC type transfactor, LHEQLE motif 341 388 IPR025756 -
Mtr1g1801 427 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 52 420 - -
Mtr1g1801 427 MobiDBLite consensus disorder prediction 231 255 - -
Mtr1g1801 427 Gene3D - 257 316 - -
Mtr1g1801 427 Coils Coil 344 364 - -
Mtr1g1801 427 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 52 420 IPR044848 GO:0003700
Mtr1g1801 427 MobiDBLite consensus disorder prediction 383 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1801 Mtr-Chr1 26491516 26495087 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1801 241 385 G2-like Transcription Factor Family AT4G28610 60.135 2.83e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr1g1801 Myb_DNA-binding 3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1801 - - gmx:102668541 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1801 1 26491516 26495087 Mtr1g1801 1 26491516 26495087 ECH