Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1800 ATGTCAACAACTTCTGGAAACCCTATTACTAATGCATCATCGGTTTCAAGTAATACAAGAATAACATGGACTCCTGATCTTCATGACAAGTTTGTTGAGTCTGTGAATCGCCTTGGTGGTGCCGAGAAGGCGTTACCAAAAGCTATATTAATGCTGATGCAGTTAGATGGATTGACAATCTTCCAAGTTAAAAGTCATTTGAAGAAATATAGAATGGCAAAATACATGGCTGAACCAGCTCAGGGGGAATCTGAGAAAAGAACAAATGTAGAGAATATGCATCTTGATGCCAAATCATTAAGGAAAGCAATGAAGATAATGTTTGACCAACAGCAGAAGAGAAGTAGTAGTGGCCAAATGAACACTCGGAATTTGGACATTACATCAAACAATGATAAACCAAACAGGCCTAAAGATACTGAGATTTCAATTTTTGAAGGGGTCTGA 447 0.3781 MSTTSGNPITNASSVSSNTRITWTPDLHDKFVESVNRLGGAEKALPKAILMLMQLDGLTIFQVKSHLKKYRMAKYMAEPAQGESEKRTNVENMHLDAKSLRKAMKIMFDQQQKRSSSGQMNTRNLDITSNNDKPNRPKDTEISIFEGV* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1800 148 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Mtr1g1800 148 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 73 IPR006447 GO:0003677
Mtr1g1800 148 MobiDBLite consensus disorder prediction 109 148 - -
Mtr1g1800 148 Pfam Myb-like DNA-binding domain 22 71 IPR001005 -
Mtr1g1800 148 Gene3D - 18 76 - -
Mtr1g1800 148 MobiDBLite consensus disorder prediction 109 131 - -
Mtr1g1800 148 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 98 IPR044848 GO:0003700
Mtr1g1800 148 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 9 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1800 Mtr-Chr1 26488838 26490727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1800 12 82 G2-like Transcription Factor Family AT5G06800 67.606 1.98e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr1g1800 Myb_DNA-binding 4.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1800 - - mtr:MTR_1g053830 198.364