Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1798 ATGTACATAAATCATTGGGATTATGAACATCAAAGCTATGAACCTTGTAGCATAGCTAATCCTCTAGAGGACATATCAGCAATAATTCATGAATCAAATGCAAATGAAACCTATATGAATTTTCAAGCTCAACAACACCATGAGTTTGACATACCTATTTGGAGCAATGAATTTTCCATGCCAACAACAACAGATTCACCTTTTCTATATTGTCAAGGCTGTAAAGATAACTACTCAGAAAATATCACCAAACAAGATCAACCAACAACCTGCTTCAAATTGGGTTCTGAATCTTTAATGTCTAGCAGTGAAGATAGTATCTCTTCTTGTGAAAAGTGTAGTGAGTTTCCCTCTTGTTCTGATAAGAGGGTGCTGGAGAGTGATTTTTCCCCAGATCATAAGTCTCATGAAATTTCCTTTCAGAAAACTCAGTGGGAATCATGTACAAAGCAAGACAAACAATCTTCACCTTGTGGCTTTGATTTTGCAACATCTACCAACTCTGATTTTAAGATAACGGCAAAGGGTAAAAGAAGATTAAGATGGACAAAAGAATTGAATGAGTCATTTATTATGATTGTCAACCAGCTTGGGGGTCCAGAAAAGGCAAAGCCTAAGGCTATACTAAAGATGATGGGTGTGGATGTGTTGACCATTTCTCATGTCAAAAGTCATTTGCAGAAATATCGCTCTACATTACACACGCACAAATGTTTGAAAGGAATATCTGAGGAAGTGCAAATAACAGATGGGATTAATGAGCTTCAAGTTAAAATCCAAATGCAAATAGAAGAATCACGACAACTACAACTTGAGGTTGAGAGGAGCAATCAACGACAATTCGAGATTCAACGAAATTTGCAACTGGTGATTGAACAGCAGAAGAAGCAGCTCAAATTAATGTTAGATCAACAAAAGAAAATAACTAAACAGGAGAAAATGATTGATTTAAAACGGAAATGA 963 0.3593 MYINHWDYEHQSYEPCSIANPLEDISAIIHESNANETYMNFQAQQHHEFDIPIWSNEFSMPTTTDSPFLYCQGCKDNYSENITKQDQPTTCFKLGSESLMSSSEDSISSCEKCSEFPSCSDKRVLESDFSPDHKSHEISFQKTQWESCTKQDKQSSPCGFDFATSTNSDFKITAKGKRRLRWTKELNESFIMIVNQLGGPEKAKPKAILKMMGVDVLTISHVKSHLQKYRSTLHTHKCLKGISEEVQITDGINELQVKIQMQIEESRQLQLEVERSNQRQFEIQRNLQLVIEQQKKQLKLMLDQQKKITKQEKMIDLKRK* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1798 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 234 IPR017930 -
Mtr1g1798 320 Gene3D - 176 233 - -
Mtr1g1798 320 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 8 319 - -
Mtr1g1798 320 Coils Coil 291 311 - -
Mtr1g1798 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 319 IPR044848 GO:0003700
Mtr1g1798 320 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 177 231 IPR006447 GO:0003677
Mtr1g1798 320 Pfam Myb-like DNA-binding domain 180 230 IPR001005 -
Mtr1g1798 320 Coils Coil 252 279 - -
Mtr1g1798 320 SUPERFAMILY Homeodomain-like 175 233 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1798 Mtr-Chr1 26460540 26463902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1798 164 305 G2-like Transcription Factor Family AT4G28610 47.222 2.09e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr1g1798 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1798 - - mtr:MTR_1g053800 626.706