Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1795 ATGAGTTCAGGTTTTGTACCTTCTCCCTCTTCACCACCTAACTCATCTACCGAGTTTCTTGATGGATTAAAGTTTGGTCAAAAAATCTACTTTGAAGATGCAACAAGTACTGTTGTTGTACCAGCTTCTCAAACCAAACCTAATGCTATTGGTGTTGGTGGCTCTTCTTCTTCATCTTCATCTTCAGGAATGAAGAGGGGAAATAATCATCCACCTAGGTGTCAAGTTGAAGGTTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTATTATTCTAGACATAAAGTTTGTTGCATGCATTCAAAATCTCCTTCTGTTGTTGTTTCTGGTTTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCATCAGCTTCCTGAATTCGATCAAGGAAAACGAAGTTGCCGCAGGCGTTTAGCTGGCCATAATGAAAGGCGGAGAAAGCCTCAACCAAGCTCCTTTTTAACCTCGCGTTCTCCCAAACTCTCCTCGCCTACTTTTGGTAACAATGGCAAAGGTAATAATGATTTTCTGATGGAATGTGCTTCATACCAAAAAATTTCTATGGGAAATGCATTATCAACTCCAAGATCAGCCAAGCCAGTTCCCGGTAATCAAGCAACACAATTTACCTGGCAGAACAACTCATCGACAACATCGGACTTTTTCCTACAAGGAACAAACTTCCATGCTCCTCCTACTAGACATCTTCCAATAATGGATAACTACAATGAAGTCACAGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTGCTCTAGAAACACAACACCACCAAGTGTTGAGATGAACAACTTGTTGAATTTCAATGGTTCACTTACTACACAATCTTCTCAAGTTGTACCCGATTATCAACTTCAAACAAATGCTTCTTCTTGGTTTTTAAAGGGCGTTGATTCTCGTAACTGTCTGTCTCCCGAGGCTGTTCCTGATCTTGGTCTCGGTCAAAATTCGCAGGCTATTCATAGTGATCTTCATGGTGAGCTTGATGTGTCACAAGGCAAGAGGCATTACTGGCCACTTTAA 1053 0.416 MSSGFVPSPSSPPNSSTEFLDGLKFGQKIYFEDATSTVVVPASQTKPNAIGVGGSSSSSSSSGMKRGNNHPPRCQVEGCKVDLSGAKAYYSRHKVCCMHSKSPSVVVSGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQPSSFLTSRSPKLSSPTFGNNGKGNNDFLMECASYQKISMGNALSTPRSAKPVPGNQATQFTWQNNSSTTSDFFLQGTNFHAPPTRHLPIMDNYNEVTDSSCALSLLSNQTWCSRNTTPPSVEMNNLLNFNGSLTTQSSQVVPDYQLQTNASSWFLKGVDSRNCLSPEAVPDLGLGQNSQAIHSDLHGELDVSQGKRHYWPL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1795 350 MobiDBLite consensus disorder prediction 45 68 - -
Mtr1g1795 350 MobiDBLite consensus disorder prediction 151 170 - -
Mtr1g1795 350 Pfam SBP domain 74 147 IPR004333 GO:0003677
Mtr1g1795 350 MobiDBLite consensus disorder prediction 138 170 - -
Mtr1g1795 350 MobiDBLite consensus disorder prediction 45 75 - -
Mtr1g1795 350 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 8 347 - -
Mtr1g1795 350 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Mtr1g1795 350 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Mtr1g1795 350 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Mtr1g1795 350 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 347 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1795 Mtr-Chr1 26357858 26362714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1795 23 283 SBP-box Gene Family AT3G57920 44.280 3.37e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr1g1795 SBP 4.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1795 - - gmx:100807165 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1795 1 26357858 26362714 Mtr1g1795 1 26357858 26362714 ECH
Mtr7g2705 7 43753849 43757758 Mtr1g1795 1 26357858 26362714 PCT