Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1791 ATGGCATACAAAAGAGTTATACCAATATCTCCCTCCCCAGAATCCAATAATGCATTCTTCGAAAACCAATCGGTAAGAATCCCCACACTCTTTAGTAGCTCCTCCGTCATTGTGGGATCCATTGTTTGTCCCATCACAACCACCGACAACAACAATGGTAAGCTGATGGGGCGAACATTAGAACAACCATCCTCTAGTAGGTTTATTGATCTATCTCCGGAACAAATGAAGGACGTTAAGGCATCCTCCTCAAAAAAACCCAAGGGTAGGCCGATAGGCTCTAAAAACAAATCAAAAGAACTTGTCGTTTTAAATGAAAAAAAACAAAACCTAATGGAACCGATTCTAATTAAGATCCCTTATGGAAAGGATGTGGTGGAGACTCTCATTGACTTGGCTCGGCATCAACAAGTTGGAATCACAGTGCGAAGTGGTTCTGGTCCTGTTTCTGGTGTTACTCTTCTCCACCCGACAACTGGTGCCCCTACTCCCCCCATGATAGGAACGTTTGATATGATATCTTTCTCTGGAACTTACATAAATGGCGATTGTCATCAGATTCCTCCCAAATTAATTGCGGTCCCAACGGGTTCCTCTTTCTCTATTTGCTTCTCTGGGGTTGGTAATGAGATATTTGGTGGAATTGTTGGAGGCAAGGTTGAGGCGGCTGGTAATGTTTTTATTACGGCAGCTCTTTTTAAAAACCCAGAGTTTCATAGGGTGTCCATCATCAATGGAACTTATCAAATTGATGAAGGCAACCCAAGAGATGTTGGTGGTATCATCCCTAGTGTTCATCATGTTGTACCTGAATCTAATAATGACTATGATATTCACATGAATGACATTGATAATTAG 858 0.4172 MAYKRVIPISPSPESNNAFFENQSVRIPTLFSSSSVIVGSIVCPITTTDNNNGKLMGRTLEQPSSSRFIDLSPEQMKDVKASSSKKPKGRPIGSKNKSKELVVLNEKKQNLMEPILIKIPYGKDVVETLIDLARHQQVGITVRSGSGPVSGVTLLHPTTGAPTPPMIGTFDMISFSGTYINGDCHQIPPKLIAVPTGSSFSICFSGVGNEIFGGIVGGKVEAAGNVFITAALFKNPEFHRVSIINGTYQIDEGNPRDVGGIIPSVHHVVPESNNDYDIHMNDIDN* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1791 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 234 IPR005175 -
Mtr1g1791 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 51 263 IPR014476 GO:0003680
Mtr1g1791 285 Gene3D - 113 252 - -
Mtr1g1791 285 MobiDBLite consensus disorder prediction 57 71 - -
Mtr1g1791 285 ProSiteProfiles PPC domain profile profile. 109 256 IPR005175 -
Mtr1g1791 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 110 241 - -
Mtr1g1791 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 51 263 - -
Mtr1g1791 285 MobiDBLite consensus disorder prediction 57 99 - -
Mtr1g1791 285 CDD DUF296 114 229 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1791 Mtr-Chr1 26322317 26323174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1791 85 241 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 36.875 1.57e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1791 - - mtr:MTR_1g053685 568.926