Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1765 ATGGATTCTAATAGTAATACTCATCATCAACTCAAACAACAGAACCAATCATATTCTTCTGGGTTGCTTCGTTTTCGTTCTGCACCTAGTTCACTTTTTTCAAATCTTACACCTTCTGCTGATTCTAATAAACTTACTAAACATTTTTGGGATGGTTCTGAATCAGAGAGATTCGTGAGTAATGATAATAATAATATTTCTGGTTTATCTTGTTCTAAGGAAATGAATTCTGGTTATGGTGCTGGTGGTTCTGGTTTGCCACCTCATTATCCTAGACATGGTTCTACTTCTACTTCAAGTTCTGCTATGGATGGTTCTTTTGGATTGGTTGGTTCATTGGGAATGGATCAAGAAACATTACATGATAAGAGTTTTGGTTCAAATCTTCTTAGACAGGGTAGTTCCCCTGCTGGTCTTTTCTCCAACATTTCCTTTCAAAATGGGTTTTCTACCATGAAAGGCGTTGGAAACTATGCCACGGTAATTGGTAGTAACGGGGAACTTAGTCCGTCTATTAACCGATTGAACACTCAGCTTAGCTTCCCTTCAAGAAATGCTTCTTCCTTAGGAATATTGTCACATATATCAGAAATAGATAACGAGGACATTGAAGCAACTAGCCCTGATGACGGAGGTAGCAATGCCGATTCTACTCACTATGGCTCTGGATTCCCCTATAGTTCTTGGAACGATACTCAATCATTCACAGAAAATCTCAGTGGTTTGAAAAGAGGGCGAAGTAGTAATGAAAAAATGTTTTCTGATATTCAGCGTGGAGGGCTTGGAAATCAAGTTCATACATTATCGCATCAGTTGAGTTTACCAAACACTTCATCTGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCCAGATTCTGTTCCTTGTAAAATTCGAGCGAAAAGAGGCTGCGCTACTCATCCTCGAAGCATTGCCGAGAGGTTAAGAAGAACTAAGATCAGTGAAAGAATGAGGAAATTGCAAGAGCTTGTTCCAAACATGGATAAGCAAACTAACACATCAGACATGTTGGACTTGGCTGTTGATTACATTAAAAATCTTCAAAAACAATTCAAGTCCCTAAGTGATAAACGAGCAAACTGCAAATGTATGAGGATGCAGATGGCAGATAAAAATCAAATTACTTGA 1149 0.3829 MDSNSNTHHQLKQQNQSYSSGLLRFRSAPSSLFSNLTPSADSNKLTKHFWDGSESERFVSNDNNNISGLSCSKEMNSGYGAGGSGLPPHYPRHGSTSTSSSAMDGSFGLVGSLGMDQETLHDKSFGSNLLRQGSSPAGLFSNISFQNGFSTMKGVGNYATVIGSNGELSPSINRLNTQLSFPSRNASSLGILSHISEIDNEDIEATSPDDGGSNADSTHYGSGFPYSSWNDTQSFTENLSGLKRGRSSNEKMFSDIQRGGLGNQVHTLSHQLSLPNTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERLRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSDKRANCKCMRMQMADKNQIT* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1765 382 SMART finulus 310 360 IPR011598 GO:0046983
Mtr1g1765 382 MobiDBLite consensus disorder prediction 80 101 - -
Mtr1g1765 382 PANTHER TRANSCRIPTION FACTOR BHLH130 14 374 - -
Mtr1g1765 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 307 372 IPR036638 GO:0046983
Mtr1g1765 382 Coils Coil 351 371 - -
Mtr1g1765 382 CDD bHLH_AtbHLH_like 309 362 IPR045239 -
Mtr1g1765 382 Pfam Helix-loop-helix DNA-binding domain 309 355 IPR011598 GO:0046983
Mtr1g1765 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 354 IPR011598 GO:0046983
Mtr1g1765 382 Gene3D - 305 380 IPR036638 GO:0046983
Mtr1g1765 382 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1765 Mtr-Chr1 25254146 25258084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1765 20 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.383 4.04e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g1765 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1765 - - gmx:100819605 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1765 1 25254146 25258084 Mtr1g1765 1 25254146 25258084 ECH
Mtr1g1765 1 25254146 25258084 Mtr4g1956 4 32930840 32935457 ECH
Mtr7g2683 7 43566655 43569751 Mtr1g1765 1 25254146 25258084 PCT