Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1742 ATGCAAGTACAATTTTTCGGTGATCATAAAATAATGGATTCTCATGACGAAACAGGATGCCAGACTCCAGAACTGCCCATACTTTGTGTTAATAATTGCGGTTTCTTTGGGAGGGCTGCTACCATGAATATGTGTTCCAAATGTTACAAAGACACGCAGTTGATGCAGGAACAGGAAAAACTAGCGGCAGCATCAGTTGAAAACTTGGTGAGTGGCGGTTCTATGAAACAGGTTGTGACTGATGGTGCTGTTAATGTACAAATTGAGAATGTGGAGGTCAAGACGGTCAGCGCTGAGATTTCTGGAGATTCATCTTCTAGTGAGAATTTGGAGACAAAAGTCAAGACAGGTCCAAGCAGATGTGCTACTTGCCGGAAGCGTGTTGGATTAACAGGTTTCACCTGCAAATGTGGAAACCTTTTTTGTGCAATGCACCGCTATTCTGACAAGCATGATTGCCCGTTTGATTACCAATCTGTTGGCCGGGATGCTATTGCTAAATCCAACCCTGTAATTAAGGCCGACAAGCTCGACAAATTCTAG 543 0.4346 MQVQFFGDHKIMDSHDETGCQTPELPILCVNNCGFFGRAATMNMCSKCYKDTQLMQEQEKLAAASVENLVSGGSMKQVVTDGAVNVQIENVEVKTVSAEISGDSSSSENLETKVKTGPSRCATCRKRVGLTGFTCKCGNLFCAMHRYSDKHDCPFDYQSVGRDAIAKSNPVIKADKLDKF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1742 180 SUPERFAMILY AN1-like Zinc finger 108 175 IPR035896 -
Mtr1g1742 180 Pfam AN1-like Zinc finger 121 158 IPR000058 GO:0008270
Mtr1g1742 180 PANTHER AN1-TYPE ZINC FINGER PROTEIN 12 179 - -
Mtr1g1742 180 Gene3D - 95 176 IPR035896 -
Mtr1g1742 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 28 64 - -
Mtr1g1742 180 ProSiteProfiles Zinc finger AN1-type profile. 115 161 IPR000058 GO:0008270
Mtr1g1742 180 ProSiteProfiles Zinc finger A20-type profile. 23 57 IPR002653 GO:0003677|GO:0008270
Mtr1g1742 180 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 12 179 - -
Mtr1g1742 180 SMART AN1_Zf_4 121 158 IPR000058 GO:0008270
Mtr1g1742 180 SMART A20_3 26 50 IPR002653 GO:0003677|GO:0008270
Mtr1g1742 180 Gene3D - 5 71 - -
Mtr1g1742 180 Pfam A20-like zinc finger 27 50 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1742 Mtr-Chr1 24643698 24645865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1742 16 180 C2H2 Transcription Factor Family AT3G52800 42.857 3.74e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1742 - - mtr:MTR_0249s0070 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1742 1 24643698 24645865 Mtr1g1742 1 24643698 24645865 ECH
Mtr1g1742 1 24643698 24645865 Mtr4g1947 4 32689706 32692864 ECH