Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1734 ATGGCAGACCCTTACTCAAATTTCTTTTCATCCAATTTCTTCCAATTCAATACTAATAATCCAACAAACCATTACCCTTCTTCTTCAAACCCTTCATCCCATCACAACCACCCTAATTATCTTCACAATTTCATTAACCACACAACTTTCAACCATAGTAACACCAACAACACCTTTTTCCACTACCATCATCATCATCATCACCATCTTCAAACTACAACTGCATCTTGTTCTTCTTCTTCTTCTTCATATTCTTCACCATCTTCCCCTCCTTTAAAAGAAGCCCTTCCACTTTTGAGTCTTATCCCTACAAAAAAGGAAGAATATGAAGATGAGGTACATAATCAACATCAACAACATCACCATCACCATCATCAATCTTGCACTTTAATGGATGTGGATGATTGTATTCGTAAAGTAGAAGAAAAAGAAGATCATGAAGGTGTGACTGTTGCACTTCATATAGGGTTACCAAGCCCTAGTTCTTCTGAGATTGCAACTATGATGTTGTCTTCGTCTTCTGAGACGATGATTAATGAACGAGATCGATTACAAGGAGATGTAGATGTTGCTATTAGCGATGATTCCTCTTCAGCTGGATTTTTGAGTCCCAATAGATCACTTAACAAGGGTCAGTATTGGATCCCTACTCCTTCTCAGATTCTTATTGGTCCTACACAATTCTCTTGTCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGTACACAACCAACAGGTATGCTAAGGCTTCCTTGCTATTGTTGTTCACCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCATTGAAAGATTTCAGAACACTTCAAACACATTATAAAAGGAAACATGGGATTAAGCCTTTTATGTGTAGAAAATGTGGTAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGTCTTTGTGGTTCGGATTTTAAGCATAAGCGATCGCTTAAAGATCATATAAGAGCTTTTGGGAGTGGTCATGCTGCTTATGGAATTGATGGTTTTGAAGAAGAGGATGAACCTGCTTCTGAAGTTGAACAAGATAATGAATCCACTCAGACTCAGTAG 1176 0.3861 MADPYSNFFSSNFFQFNTNNPTNHYPSSSNPSSHHNHPNYLHNFINHTTFNHSNTNNTFFHYHHHHHHHLQTTTASCSSSSSSYSSPSSPPLKEALPLLSLIPTKKEEYEDEVHNQHQQHHHHHHQSCTLMDVDDCIRKVEEKEDHEGVTVALHIGLPSPSSSEIATMMLSSSSETMINERDRLQGDVDVAISDDSSSAGFLSPNRSLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDGFEEEDEPASEVEQDNESTQTQ* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1734 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
Mtr1g1734 391 Gene3D Classic Zinc Finger 227 250 - -
Mtr1g1734 391 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Mtr1g1734 391 MobiDBLite consensus disorder prediction 73 94 - -
Mtr1g1734 391 Gene3D Classic Zinc Finger 289 366 - -
Mtr1g1734 391 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 59 388 - -
Mtr1g1734 391 MobiDBLite consensus disorder prediction 372 391 - -
Mtr1g1734 391 MobiDBLite consensus disorder prediction 73 90 - -
Mtr1g1734 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 332 IPR013087 -
Mtr1g1734 391 SUPERFAMILY beta-beta-alpha zinc fingers 297 332 IPR036236 -
Mtr1g1734 391 SMART c2h2final6 228 250 IPR013087 -
Mtr1g1734 391 SMART c2h2final6 312 332 IPR013087 -
Mtr1g1734 391 PANTHER ZINC FINGER PROTEIN WIP2 59 388 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1734 Mtr-Chr1 24219942 24223854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1734 1 391 C2H2 Transcription Factor Family AT3G57670 58.394 1.31e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g1734 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1734 - - qlo:115952484 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1734 1 24219942 24223854 Mtr1g1734 1 24219942 24223854 ECH
Mtr7g2672 7 43434010 43436606 Mtr1g1734 1 24219942 24223854 PCT