Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1716 ATGGAGAAAATGGCACTTACTGTTCAAAACTCTCTATTATTCTCTTCAACAACATTTCCAAAGAAAAACTCTTCTTCTCCATTTTTCTTCAATAAACGTAACAAGCTCTTTGGACTTCCCTTATCTTCTTCCAAACCAACTCTTCGAATTGCTTCAAGGAACAATAAGGCAATTAAATGTTCAATTTCAGAAGTCACAGAGCCGAAAACTGAGGAGAAGAAGAAATTGATGAGAAGAGCAGATATTAGAAATATTGCAATTGTTGCTCATGTTGATCATGGTAAAACAACTCTCGTTGATGCTATGCTCAAACAAACTAAGGTGTTTCGTGATAATCAAACTGTACAAGAAAGGATAATGGACTCTAATGATTTGGAGCGTGAAAGAGGAATCACTATACTGAGTAAAAATACATCTGTGACTTATAAAGATGCCAAGATTAATATAATTGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTAGAGCGCATCTTGAATATGGTCGAAGGAATTCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTAAAGAAGGCTTTAGAGTTTGGCCATGCAGTTGTTGTGGTTGTGAATAAAATAGACAGGTCTTCTGCTCGCCCTGATTTTGTCGTCAATTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAGGTTATATATGCAAGTGGTATAAAAGGGAAAGCAGGGTTGTCTCCTGAAGATCTGGCAGACGACCTTGGGCCATTATTTGAATCAATCATGAGATGTATCCCTGGACCGCGTATTGATAAAGATGGCTCACTCCAAATGCTTGTTACAAGTACCGAGTACGAGGGACATAAAGGACGTATAGCAATTGGGCGCTTGGAAGCTGGAGTTTTAGAAAAAGGCATGGAAGTCAAGGTTTGTACCTCAGAAGATTCATGTAGATATGCAAGAGTTAGTGAGCTTTATGTGTATGAAAAATTCTTTCGGGTCCCTGCTGAAAGGGTGGAGGCTGGGGATATATGTGCAGTATGTGGAATTTCTGATGTTCAGATTGGCGAGACAATTGCGGATAAATTGACTGGAAAGGCACTACCTTCCATCAAAGTAGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACATCGCCTTTTGTTGGTCGTGAGGGAAAGTATGTTACCAGTAGGAATTTAAGGGACAGGCTTTATCGTGAACTTGAGCGAAATCTGGCTATGAAGGTTGAAGATGGTGAAACAGCCGATACATTCATTGTCAGTGGACGTGGAACACTGCATATCACTATACTCATTGAAAATATGCGAAGGGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTTGATGACAAAGTGTTGGAGCCGTATGAGATTGCAACTGTGGAGGTACCGGAAGAGCATATGGGATCTGTTGTTGAACTTCTTGGCCAGAGACGAGGGCAAATGTTCGACATGCAAGGAGTTGGATCGGAGGGAACTAACCTACTCAAATATAAGATCCCAACCCGTGGCCTACTTGGATTGCGGAATGCAATTTTAACTGCTTCTCGAGGGACAGCTATCCTCAACACTATCTTCGATTCCTATGGGCCTTGGGCTGGTGACATGAGTACTCGGGATTTAGGCTCACTGGTTGCTTTCGAAAATGGAACAGTTACTTCTTATGCAGTCGCGAGTTCACAGGAGAGGGGGCAAATGTTTGTTGGTCCAGGAGCGGAAGTTTATAAAGGTCAAATTATTGGCATCCATCAACGCCCTGGGGACTTGTCCTTGAATGTTTGCAAGAAAAAAGCTGCAACGAACATACGTTCCAACAAGGAACAATCAGTGATTCTTGATACACCGTTGGATTACAGTTTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGGTCACCCCCCAAAGTATAAGAATGCTGAAGAATCCAAAATTTGCAAAGAAAGGAAGGTAA 2025 0.4123 MEKMALTVQNSLLFSSTTFPKKNSSSPFFFNKRNKLFGLPLSSSKPTLRIASRNNKAIKCSISEVTEPKTEEKKKLMRRADIRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQTVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRSSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGKAGLSPEDLADDLGPLFESIMRCIPGPRIDKDGSLQMLVTSTEYEGHKGRIAIGRLEAGVLEKGMEVKVCTSEDSCRYARVSELYVYEKFFRVPAERVEAGDICAVCGISDVQIGETIADKLTGKALPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVDDKVLEPYEIATVEVPEEHMGSVVELLGQRRGQMFDMQGVGSEGTNLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDMSTRDLGSLVAFENGTVTSYAVASSQERGQMFVGPGAEVYKGQIIGIHQRPGDLSLNVCKKKAATNIRSNKEQSVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMLKNPKFAKKGR* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1716 674 Pfam Elongation factor Tu GTP binding domain 81 272 IPR000795 GO:0003924|GO:0005525
Mtr1g1716 674 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 67 674 - -
Mtr1g1716 674 CDD BipA_TypA_C 475 554 IPR035651 -
Mtr1g1716 674 Gene3D - 466 559 - -
Mtr1g1716 674 Pfam Elongation factor Tu domain 2 296 365 IPR004161 GO:0005525
Mtr1g1716 674 PANTHER BNAC09G43450D PROTEIN 67 674 - -
Mtr1g1716 674 Gene3D bipa protein 560 639 IPR042116 -
Mtr1g1716 674 CDD BipA_III 382 460 - -
Mtr1g1716 674 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 121 136 IPR031157 -
Mtr1g1716 674 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 82 668 IPR006298 GO:0005525
Mtr1g1716 674 CDD BipA_TypA_II 282 375 - -
Mtr1g1716 674 PRINTS GTP-binding elongation factor signature 84 97 IPR000795 GO:0003924|GO:0005525
Mtr1g1716 674 PRINTS GTP-binding elongation factor signature 128 136 IPR000795 GO:0003924|GO:0005525
Mtr1g1716 674 PRINTS GTP-binding elongation factor signature 148 158 IPR000795 GO:0003924|GO:0005525
Mtr1g1716 674 PRINTS GTP-binding elongation factor signature 200 209 IPR000795 GO:0003924|GO:0005525
Mtr1g1716 674 Pfam Elongation factor G C-terminus 473 557 IPR000640 -
Mtr1g1716 674 SUPERFAMILY EF-G C-terminal domain-like 380 464 IPR035647 -
Mtr1g1716 674 TIGRFAM small_GTP: small GTP-binding protein domain 82 231 IPR005225 GO:0005525
Mtr1g1716 674 Gene3D Elongation Factor G (Translational Gtpase), domain 3 383 666 - -
Mtr1g1716 674 SUPERFAMILY EF-G C-terminal domain-like 475 590 IPR035647 -
Mtr1g1716 674 SUPERFAMILY Translation proteins 228 371 IPR009000 -
Mtr1g1716 674 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 80 275 IPR000795 GO:0003924|GO:0005525
Mtr1g1716 674 Gene3D - 79 275 IPR027417 -
Mtr1g1716 674 SMART EFG_C_a 472 561 IPR000640 -
Mtr1g1716 674 CDD TypA_BipA 81 274 - -
Mtr1g1716 674 Gene3D Translation factors 276 376 - -
Mtr1g1716 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 283 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1716 Mtr-Chr1 23445886 23453537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1716 82 209 Eukaryotic Initiation Factors Gene Family AT3G22980 43.846 4.70e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1716 K06207 - gmx:100785222 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1716 1 23445886 23453537 Mtr1g1716 1 23445886 23453537 ECH