Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1706 ATGGGTACTCCAGAATTTCCAGATCTAGGAAAACACTGCGCTGACTCCGATTGCAAGCTCGTTGATTTCTTGCCCTTCACTTGCGATCGCTGCTATCAGGTGTATTGTTTGGAACACCGAAGTTATATCAAACATCGCTGTACAAAAGCTGACAAGCAAGATGTCACTGTAGTAATATGTCCACTTTGCGCTAAAGGAGTCCGCCTAGTTCCTGAGCAAGATCCAAACATAACATGGGAGAATCATGTTAACACCGACTGCGACCCATCAAATTATGAGAAAGTTACAAAGAAGAAAAAATGCCCTGCAGCTGGATGCAAAGAGATCTTAGTATTCTCAAACACAATTAAATGCAAGGATTGCACGATAGACCATTGTTTGAAGCATAGGTTTGGTCCTGATCACAAATGTCCAGGACCTAAAAAAGTGGAAACAAATTTCCCTTTTATGAATCTAATGAATAGGAGTAGAAAGAAGGAGTCTAAAACCAACTCAAGTTCAACCTCCTCTTCATCTAAATGGACTACAAGCTTTCTTAATGCTGCTTCTAATATTCGAGCTTCAGCTGAGGCTGGAATGTCAAAGTTGAGTGGTGAAATTAACCAAGCATGGGGGACATCAAGTGATGGTGGGAGAAAGAGCAACGACAATGGTCAAGTGGAGCAATGCCCTCAATGCGGTGCCAAGTTTTCCTCGATCACTACTTTAATCAATCATGTGCAAAAAGTTCATGAAAGAAGTGGCAGCCGATCTGCTGCGAATGTTACCATTGATGCGTGTCCTAAGTGCAGTAAAGGATTCACAGATCCCGTGTCCCTTGTGGAGCATGTTGAGAGGGAACATGGTGGAACTTCTAGAAGATAG 864 0.4259 MGTPEFPDLGKHCADSDCKLVDFLPFTCDRCYQVYCLEHRSYIKHRCTKADKQDVTVVICPLCAKGVRLVPEQDPNITWENHVNTDCDPSNYEKVTKKKKCPAAGCKEILVFSNTIKCKDCTIDHCLKHRFGPDHKCPGPKKVETNFPFMNLMNRSRKKESKTNSSSTSSSSKWTTSFLNAASNIRASAEAGMSKLSGEINQAWGTSSDGGRKSNDNGQVEQCPQCGAKFSSITTLINHVQKVHERSGSRSAANVTIDACPKCSKGFTDPVSLVEHVEREHGGTSRR* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1706 287 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 286 - -
Mtr1g1706 287 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Mtr1g1706 287 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Mtr1g1706 287 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Mtr1g1706 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 249 IPR013087 -
Mtr1g1706 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 286 IPR013087 -
Mtr1g1706 287 Pfam Zinc finger, C2H2 type 260 281 IPR013087 -
Mtr1g1706 287 ProSitePatterns Zinc finger C2H2 type domain signature. 260 281 IPR013087 -
Mtr1g1706 287 Gene3D - 81 163 IPR035896 -
Mtr1g1706 287 Gene3D - 2 60 IPR035896 -
Mtr1g1706 287 Pfam C2H2-type zinc finger 222 244 - -
Mtr1g1706 287 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 286 - -
Mtr1g1706 287 SUPERFAMILY beta-beta-alpha zinc fingers 222 277 IPR036236 -
Mtr1g1706 287 ProSitePatterns Zinc finger C2H2 type domain signature. 223 244 IPR013087 -
Mtr1g1706 287 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Mtr1g1706 287 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Mtr1g1706 287 MobiDBLite consensus disorder prediction 148 173 - -
Mtr1g1706 287 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Mtr1g1706 287 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Mtr1g1706 287 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Mtr1g1706 287 MobiDBLite consensus disorder prediction 201 220 - -
Mtr1g1706 287 Gene3D Classic Zinc Finger 197 284 - -
Mtr1g1706 287 SMART c2h2final6 221 244 IPR013087 -
Mtr1g1706 287 SMART c2h2final6 258 281 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1706 Mtr-Chr1 23187013 23191641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1706 1 286 C2H2 Transcription Factor Family AT2G41835 63.066 3.58e-130 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g1706 zf-AN1 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1706 - - gmx:100786272 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1706 1 23187013 23191641 Mtr1g1706 1 23187013 23191641 ECH
Mtr7g2651 7 43201192 43203046 Mtr1g1706 1 23187013 23191641 PCT