Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1693 ATGGGGAGAGGAAAGATTGAGATTAAGAAGATTGAGAATTTGAATAACAGGCAAGTTACATTTTCTAAGAGACGCAATGGTTTGCTCAAAAAAGCCAAAGAGTTGTCTGTTCTTTGTGATGCAGAGGTTGCTGTTATCATATATTCTGGTACTGGCAAGCTTTATGAGTTTTCAAGCACAAGTATGGAGCACACCATTTCAAGGTACGGTAACCGAGGCCTTGGTTTGAATAATGGAGCAGAACAGGAACAACCCAGTGATCAGCCTCCACCACAAGTTATGGAGCTTGATACGACCATTCTGCAGGAAGAAATAGCAAAACTTCGTTCAGCTTACTTAAGAATGAGGGGTAAGGAGCTTGATGGATTGGGCCTTAAAGAACTGCAGTACCTAGAACATCAACTCTGTGAAGGGATATCAGCTGTCAAAAATAAGAAGGAACAAGTGCTTGCTGAACAACTTAAGAGATCCAGGTTACAGGAGCAAAAGGCTATGATGGAGAATGAAGCTCTTCGCAAACAACTTGAGGAGATAGTAAATAAAAGAAAGGCAGAGTTCATTGAATTTCATCCGTTGGATAGGACAATTTCAATCAACGGTTCAAAACCTCCTTTCAATTATGCTTTAGAGGGTAACAAGATTTCAGATACTTCCTTGCAGTTAGGGTTGTCATCAGATTATGATCACAAGAGGAAAGAATGCAAGATAGAACCTAGCAACAACTCGGGGAGTCAAGTTGCTTCACAATGA 750 0.4053 MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIYSGTGKLYEFSSTSMEHTISRYGNRGLGLNNGAEQEQPSDQPPPQVMELDTTILQEEIAKLRSAYLRMRGKELDGLGLKELQYLEHQLCEGISAVKNKKEQVLAEQLKRSRLQEQKAMMENEALRKQLEEIVNKRKAEFIEFHPLDRTISINGSKPPFNYALEGNKISDTSLQLGLSSDYDHKRKECKIEPSNNSGSQVASQ* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1693 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr1g1693 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr1g1693 249 PANTHER BNAC04G24260D PROTEIN 1 237 - -
Mtr1g1693 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 237 - -
Mtr1g1693 249 MobiDBLite consensus disorder prediction 77 91 - -
Mtr1g1693 249 Gene3D - 14 73 IPR036879 GO:0003677|GO:0046983
Mtr1g1693 249 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677|GO:0046983
Mtr1g1693 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g1693 249 Coils Coil 142 181 - -
Mtr1g1693 249 MobiDBLite consensus disorder prediction 69 91 - -
Mtr1g1693 249 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Mtr1g1693 249 Pfam K-box region 92 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr1g1693 249 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr1g1693 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr1g1693 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g1693 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g1693 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1693 Mtr-Chr1 22442018 22448618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1693 1 242 MADS-box Gene Family AT5G13790 46.774 9.59e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr1g1693 K-box 5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1693 - - gmx:100792278 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1693 1 22442018 22448618 Mtr1g1693 1 22442018 22448618 ECH