Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1666 ATGGCAAAGAGGAAGAGCTGGTTTGGCTGGGTGAAAAGTCTATTCATTTCTGAGTCAAAGGACAAAAAGCAAAAGAAATGTGGATGGAGATTTGCAAGGATTAAACAAAAGCTATTATACCCCAAAATTACAGCTTCAAACAAGACTTTGATTGAAGCAAGTGAAGAACAGAGAAAGCATGCATTGGCTGTGGCTATTGCAACAGCATCTGCAGCAGAAGCTGCTATTGCTGCTGCACATGCTGCTGCTGAGGTTGTCAAGCTCACAAGTGGCACGTCTCGTTCTTATTCGTATCTATCCAAGGGAGACAGAAGTTTGGCTGCCATCAAGATTCAAAGTGTATACCGTGCGCATCTTGCTAGGAAAGCATTAAGAGCATTGAAGGGAGTGATAAGACTTCAAGCCATAATTCGCGGTGAAGCTGTTAGGCGTCGAGTGTCCAGAACTTTGAAGAATATTCCCTCAAATGCAAAAACTGAGAAGCAAATCGAGGAAAGAAGCAGCCATACAAAGGAAGAAAACTACGAAAATGACCATATAAAACAGTTTCCAAAGCAAAAGAAAAAGATAGAAGAGAATGAACTTAAGCCTGAACTCCATAGTCAAAGAACTTGGAATTGTAGCTCACACTCGAGAGAAGACATTGAAGCCATATGGTTAAGAAAGCAAGAGGCTATTGTCAAAAGAGACCGCATGAGGCAATACTCTTCTTCGCAAAAGGAGAGAATGTTTTCCCAAATGGTGGAAGAATCTTTGCACAACAAAGAATTTGTTGAAGATAATTGTCGTACTCTAGGAGAGTGGCTACATAAAGAAACATGTAACTGGGATGTTCTTTATAAACCGGCTCATCCTTCGAATATTACAATAAGAAATGAAGTGCAAGAAGGATTGAAATCACAAGTTTCAGTCCAAAGAAAATCATTTTCTCATGTAAAAAGAAGTTCAATCGGAGATGAGAGTTCTCTGCCGAATTCTCCGGTTTTCCCTAAGTACATGGCTGTGACTGAATCTAGCAAAGCAAAAGTAAGGTCTATGAGCACACCAAGGCTAAGAACAGGATTTTCGGATGTGTGTTCAAATCAGAATGAGCACCAATACATGAATTTCTAA 1113 0.4007 MAKRKSWFGWVKSLFISESKDKKQKKCGWRFARIKQKLLYPKITASNKTLIEASEEQRKHALAVAIATASAAEAAIAAAHAAAEVVKLTSGTSRSYSYLSKGDRSLAAIKIQSVYRAHLARKALRALKGVIRLQAIIRGEAVRRRVSRTLKNIPSNAKTEKQIEERSSHTKEENYENDHIKQFPKQKKKIEENELKPELHSQRTWNCSSHSREDIEAIWLRKQEAIVKRDRMRQYSSSQKERMFSQMVEESLHNKEFVEDNCRTLGEWLHKETCNWDVLYKPAHPSNITIRNEVQEGLKSQVSVQRKSFSHVKRSSIGDESSLPNSPVFPKYMAVTESSKAKVRSMSTPRLRTGFSDVCSNQNEHQYMNF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1666 370 PANTHER IQ-DOMAIN 5-RELATED 1 368 - -
Mtr1g1666 370 SMART iq_5 103 125 IPR000048 GO:0005515
Mtr1g1666 370 MobiDBLite consensus disorder prediction 153 203 - -
Mtr1g1666 370 Pfam Protein of unknown function (DUF4005) 319 353 IPR025064 -
Mtr1g1666 370 MobiDBLite consensus disorder prediction 158 199 - -
Mtr1g1666 370 Gene3D - 95 153 - -
Mtr1g1666 370 PANTHER IQ-DOMAIN 12 1 368 - -
Mtr1g1666 370 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Mtr1g1666 370 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Mtr1g1666 370 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1666 Mtr-Chr1 21905421 21908169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1666 1 357 IQD Protein Family AT5G03960 43.316 3.81e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1666 - - cam:101513369 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1666 1 21905421 21908169 Mtr1g1666 1 21905421 21908169 ECH