Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1652 ATGGAAGTGGAGATGGAAAATTCAACAACGACTGAATCGTCTGTACCTGGTTCTGATGTTCAAGATCAAAACCCTCTAGTTTCGTCCCAGCCAACTCAACCACCGGTTATTACTCCTGTCTTGCCATCTCTGGCTCCAATTCCTACAGCTCCTTCCTCTCTTGTCCGACCTCTGGCACCGCTCCCAATGCGCCCACTGGTTATTAGGCCGCCGATACCGCAAAATGGCGAGGTTGGGTCTAGTGATTCTGATTCGGACGATGATGATGGTGCAGACACCAGAATTAATAAGGGTACTGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTGAGGGAGCGGCATGAGAAAGCCATGCAAGACCTTATGATGAGGAGGCGAGCTGCTGCTCTTGCTGTTCCCACCAATGACATGGCAGTCAGGGCCCGTCTTCGCCATCTTGGTGAGCCGATTACTCTCTTTGGTGAGAGGGAGATGGAGAGACGAGATAGGTTGCGGATGATTATGGCAAAGCTGGATGCTGATGGTCAGCTGGAAAAGCTAATGAAAGCTCTTGAGGATGAAGAGGCTGCAACTTCTGCTCCAAAAGATGAGGCCGAGGATGATCTAGAGTATCCTTTTTACACTGAAGGGTCAAAGTCTCTCCTTGATGCAAGGATTGATATTGCGAAATATTCTTTAGTAAAGGCCGCATTGCGGATTCAACGTGCCCAGAGAAGAAGAGAGGATCCGGATGAAGATGTGGATGCGGAGATAGATTGGACATTGAAGCAGGCAGCGAATTTGAATCTTGAATTCAGTGAAATCGGTGATGATCGACCACTTACTGGTTGCTCGTTCTCCCGGGATGGAAAAGGGCTTGCTACCTGTTCTTTCACTGGAGCTACCAAGTTGTGGAGCATGCCTAATGTTAAAAAAGTTTCTACCTTGAAGGGGCACACCCAGCGTGCTACTGATGTTGCTTATTCTCCTGTGCACAAAAATCATTTAGCAACTGCCTCTGCTGACCGGACAGCAAAGTATTGGAATGATCAAGGAGCTCTTTTGGGAACATTTAAGGGTCATCTTGAACGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACTTGGGCACTGCTAGCTATGACAAGACATGGAGGTTATGGGATGTTGAAACAGAAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGATTTCCATCATGATGGATCGTTAGCTGCGTCTTGTGGACTAGACGCTCTGGCTCGTGTATGGGACCTTCGAACTGGGAGAAGTGTTCTTGCACTAGAAGGTCATGTCAAATCGATTCTTGGCATCAGTTTTTCTCCCAATGGATATCATTTAGCCACCGGTGGTGAAGATAACACTTGTCGTATTTGGGACTTGAGGAAGAAGAAGTCCTTGTACACCATTCCCGCTCACTCTAATCTAATATCACAGGTCAAATTTGAGCCACAGGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACGGCCAAGGTTTGGTCAGGCCGGGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCTAAAGTTACTTCTCTGGATGTTCTTGGAGATGGTGGGTATATTGTTACCGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCGGCACTACTAGTGAGCATGCTATGGATGTTGACTAA 1698 0.4735 MEVEMENSTTTESSVPGSDVQDQNPLVSSQPTQPPVITPVLPSLAPIPTAPSSLVRPLAPLPMRPLVIRPPIPQNGEVGSSDSDSDDDDGADTRINKGTGEYEISEESRLVRERHEKAMQDLMMRRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKALEDEEAATSAPKDEAEDDLEYPFYTEGSKSLLDARIDIAKYSLVKAALRIQRAQRRREDPDEDVDAEIDWTLKQAANLNLEFSEIGDDRPLTGCSFSRDGKGLATCSFTGATKLWSMPNVKKVSTLKGHTQRATDVAYSPVHKNHLATASADRTAKYWNDQGALLGTFKGHLERLARIAFHPSGKYLGTASYDKTWRLWDVETEEELLLQEGHSRSVYGLDFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKSILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSGTTSEHAMDVD* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1652 565 CDD WD40 274 553 - -
Mtr1g1652 565 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Mtr1g1652 565 SUPERFAMILY WD40 repeat-like 262 552 IPR036322 GO:0005515
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 553 - -
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 431 - -
Mtr1g1652 565 Gene3D - 249 435 IPR015943 GO:0005515
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 343 IPR001680 GO:0005515
Mtr1g1652 565 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Mtr1g1652 565 PRINTS G protein beta WD-40 repeat signature 455 469 IPR020472 -
Mtr1g1652 565 PRINTS G protein beta WD-40 repeat signature 540 554 IPR020472 -
Mtr1g1652 565 Pfam pre-mRNA processing factor 4 (PRP4) like 140 166 IPR014906 -
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 478 520 IPR001680 GO:0005515
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 343 - -
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 478 511 - -
Mtr1g1652 565 MobiDBLite consensus disorder prediction 66 99 - -
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 436 477 IPR001680 GO:0005515
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 553 IPR001680 GO:0005515
Mtr1g1652 565 SUPERFAMILY PRP4-like 118 173 IPR036285 -
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 436 470 - -
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 393 IPR001680 GO:0005515
Mtr1g1652 565 PANTHER U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP4 70 554 - -
Mtr1g1652 565 Gene3D - 111 179 IPR036285 -
Mtr1g1652 565 Coils Coil 171 191 - -
Mtr1g1652 565 SMART pr04_2 135 188 IPR014906 -
Mtr1g1652 565 PANTHER WD40 REPEAT PROTEIN 70 554 - -
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 389 - -
Mtr1g1652 565 ProSitePatterns Trp-Asp (WD) repeats signature. 455 469 IPR019775 -
Mtr1g1652 565 Gene3D - 436 563 IPR015943 GO:0005515
Mtr1g1652 565 MobiDBLite consensus disorder prediction 1 53 - -
Mtr1g1652 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 435 IPR001680 GO:0005515
Mtr1g1652 565 ProSitePatterns Trp-Asp (WD) repeats signature. 413 427 IPR019775 -
Mtr1g1652 565 Pfam WD domain, G-beta repeat 433 468 IPR001680 GO:0005515
Mtr1g1652 565 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
Mtr1g1652 565 Pfam WD domain, G-beta repeat 395 426 IPR001680 GO:0005515
Mtr1g1652 565 Pfam WD domain, G-beta repeat 516 553 IPR001680 GO:0005515
Mtr1g1652 565 Pfam WD domain, G-beta repeat 347 384 IPR001680 GO:0005515
Mtr1g1652 565 Pfam WD domain, G-beta repeat 474 511 IPR001680 GO:0005515
Mtr1g1652 565 SMART WD40_4 303 343 IPR001680 GO:0005515
Mtr1g1652 565 SMART WD40_4 471 511 IPR001680 GO:0005515
Mtr1g1652 565 SMART WD40_4 387 426 IPR001680 GO:0005515
Mtr1g1652 565 SMART WD40_4 514 553 IPR001680 GO:0005515
Mtr1g1652 565 SMART WD40_4 429 468 IPR001680 GO:0005515
Mtr1g1652 565 SMART WD40_4 345 384 IPR001680 GO:0005515
Mtr1g1652 565 SMART WD40_4 261 300 IPR001680 GO:0005515
Mtr1g1652 565 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1652 Mtr-Chr1 21512766 21517123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1652 356 552 U-box Gene Family AT2G33340 22.172 1.88e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1652 K12662 - gmx:100788948 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1652 1 21512766 21517123 Mtr1g1652 1 21512766 21517123 ECH