Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1640 ATGGATATTTTAATTTCTGTTGTTGCAAAAATAGCAGAATATACCGTTGTGCCTATTGGACGTCAAGCAAGTTACTTGATATTCTACAAAGGCAACTTCAAGAAGTTAAAGGATCATGTTGAAGACCTTCAGGCTGCAAGAGAAATAATGCTCCATTCGGTTGCAAGAGAAAGGGGAAATGGTAGAGAAATTGAAAAACATGTTCTAAATTGGTTGGAGAAAGTGAACGAGGTCATTGAAAATGCAAATCGGCTTCAAAACGATCCTCGTCGTCCCAATGTTAGGTGCTCAGCATGGTCATTCCCCAACTTGATTTTACGTCATCAACTAAGTAGGAAAGCTACAAAAATTACAAACGATGTTGATCAAGTTCAAAGAAAGGAGGTTTTTGATCAAATTGGCTACCTTCCCCCTCTTGATGTAGTAGCCTCCTCCTCCTCAACAAGAGATGGTGAAAAGTATGACACAAGGGAGTTGCTTAAGGAGGACATTGTGAAGGCTTTAGCAGATCCTACTTCACGCAACATTGGGGTCTATGGGTTGGGTGGGGTGGGGAAGACCACTCTGGTGCGGAAAGTTGCTGAGACAGCCAATGAACATAAATTGTTTGATAAAGTGGTTATCACAGAAGTATCGAAAAATCCAGACATTAAAAAAATTCAAGCGGAGATTGCAGATTTCTTGGGTCTGCGATTTGAAGAGGAGAGTATTCTCGGCAGAGCAGAACGCCTTAGACAAAGAATCAAGATGGAGAGAAGTGTCCTTATCATTCTAGATAACATATGGACCATACTTGATTTGAAAGAAGTGGGGATACCAGTTGGTAATGAACATAATGGTTGCAAATTGTTGATGACAAGTAGAAATCAAGATGTGTTGCTGCAAATGGATGTCCCAAAGGATTTCTCTTTCAAAGTTGAACTTATGAGTGAAAATGAGTCATGGAGCTTGTTTCAATTTATGGCAGGGGATGTGGTTAAAGATAGCAATTTGAAAGATCTACCATTTAAAGTGGCCAGAAAATGTGCAGGTTTGCCTCTTAGGGTAGTGACAGTAGCGCGTGCAATGAAAAATAAGAGGGATGTTCAGTCTTGGAAAGATGCATTAAGGAAATTACAAAGTAATGATCATACAGAGATGGACCCGGGAACTTATTCTGCTTTGGAATTGAGTTACAACTCATTGGAGAGTGATGATATGAGGGATCTCTTCTTGCTTTTTGCATTAATGCTAGGTGATGATATAGAGTACTTTCTCAAAGTTGCAAAGGGGTTGGACATATTGAAGCATGTTAATGCCATAGATGATGCAAGAAACAGACTTTACACAATAATCAAATCTTTGGAGGCGGCTTGTCTTTTGCTTGAAGTTAAAACAGACGGAAATATCCAAATGCATGACTTTGTTCGTGATTTTGCTATCTCCATAGCACGTAGGGACAAGCATATATTTCTAAGAAAACAATCTGATGAGGAATGGCCAACCAATGATTTTCTAAAAAGGTGCACGCAGATCTTTCTAAAAAGATGTCATACACTCGAGCTTCCTCAAACGATAGATTGTCCAAACGTTAAGCTTTTCTATTTGGGCTGTAACATTTCTTCTTTCAAAATCCCTGATGCTTTTTTTGAGGGAATGAGAAGCCTTAGAGTGCTAGACTTAACGCGCTTGAACTTGTTATCATTACCCACGTCGTTTCGGTTCCTAACAGAGCTTCAAACATTGTGTTTGGATTATTGCATTTTGGAAAATATGGATGCAATAGAAGCTTTGCAAAATTTAGAAATTCTTCGCCTTTGGAAATCTTCAATGATCAAGTTGCCAAGAGAAATAGGGAGATTGATTCGATTGAGAATGCTTGACTTGAGCCATTCAGGAATAGAGGTAGTCCCACCCAACATCATATCAAGCTTGACTAAATTGGAGGAGTTGTACATGGGTAATACCTCTATTAATTGGGAAGATGTGAGTTCAACGTTTCATAATGAAAATGCTAGTCTTGCCGAGCTTCAAAAACTACCCAAATTGACAGCTCTAGAATTACAAATTCGTGAGACTTGGATGTTGCCAAGGGACTTGCAATTGGTGTTTGAGAAGCTGGAAAGATATAAAATAGCTATTGGAGATGTATGGGACTGGTCTGACATCAAGGATGGAACCTTAAACACATTGATGCTCAAACTTGGTACAAACATACATTTGGAGCATGGAATTAAAGCATTGATTAAAGGTGTTGAGAATTTGTATTTGGATGATGTAGATGGAATTCAAAATGTGCTTCCTCACCTAAATAGAGAAGGATTTACATTGCTGAAACATCTCCATGTCCAAAATAATACTAACTTGAATCACATTGTTGACAATAAAGAGAGAAATCAAATCCATGCGTCCTTTCCCATCTTGGAAACACTAGTGCTTCTTAATCTTAGAAACTTGGAGCATATATGTCATGGTCAACCTTCAGTTGCTTCTTTTGGAAGTCTCAGTGTTATCAAAGTAAAAAATTGCGTCCAGTTAAAGTATCTTTTCTCCTTTACAATGGTTAAAGGACTTTCTCACCTTTCTAAGATTGAAGTTTGTGAGTGCAATTCTATGAAGGAGATAGTGTTCAGAGACAACGATTCAAGTGCTAATAATGATATCACTGATGAAAAAATCGAGTTTCTTCAATTGCGTTCTTTGACTTTAGAACATTTGAAGACACTTGATAATTTTGCCTCTGATTATTTGACACATCATAGAAGTAAGGAAAAGTATCACGATGTAGAGCCATATGCTTCTACTACACCATTTTTCAATGCTCAGGTTTCATTTCCTAATTTGGATACCCTTAAATTAAGCTCACTTCTCAATTTGAACAAAGTCTGGGATGAGAATCATCAATCAATGTGCAACTTGACTAGCTTGATTGTGGATAATTGTGTTGGATTGAAGTATTTATTCTCCTCTACTTTGGTTGAAAGTTTTATGAACCTCAAACATCTTGAAATAAGTAATTGTCCTATCATGGAGGATATAATCACTAAAGAAGATAGAAATAATGCAGTAAAAGAGGTTCATTTTTTGAAATTAGAGAAAATGATATTGAAGGATATGGACAGCTTGAAGACAATATGGCATCGGCAATTTGAAACATCGAAGATGTTGGAAGTGAACAATTGTAAGAAAATTGTGGTGGTTTTTCCTTCTTCAATGCAAAACACATATAATGAGCTTGAGAAGTTGGAGGTTAGAAATTGTGCTTTAGTTGAAGAGATATTTGAATTGAATTTGAATGAAAATAACAGTGAAGAGGTTATGACACAATTGAAAGAGGTTACTCTAGATGAACTGATGAAGTTGAAAAATAATGGAGTGGAGATCCTCAAGGAATTCTTAGTTTTCAAAATCTAA 3393 0.3705 MDILISVVAKIAEYTVVPIGRQASYLIFYKGNFKKLKDHVEDLQAAREIMLHSVARERGNGREIEKHVLNWLEKVNEVIENANRLQNDPRRPNVRCSAWSFPNLILRHQLSRKATKITNDVDQVQRKEVFDQIGYLPPLDVVASSSSTRDGEKYDTRELLKEDIVKALADPTSRNIGVYGLGGVGKTTLVRKVAETANEHKLFDKVVITEVSKNPDIKKIQAEIADFLGLRFEEESILGRAERLRQRIKMERSVLIILDNIWTILDLKEVGIPVGNEHNGCKLLMTSRNQDVLLQMDVPKDFSFKVELMSENESWSLFQFMAGDVVKDSNLKDLPFKVARKCAGLPLRVVTVARAMKNKRDVQSWKDALRKLQSNDHTEMDPGTYSALELSYNSLESDDMRDLFLLFALMLGDDIEYFLKVAKGLDILKHVNAIDDARNRLYTIIKSLEAACLLLEVKTDGNIQMHDFVRDFAISIARRDKHIFLRKQSDEEWPTNDFLKRCTQIFLKRCHTLELPQTIDCPNVKLFYLGCNISSFKIPDAFFEGMRSLRVLDLTRLNLLSLPTSFRFLTELQTLCLDYCILENMDAIEALQNLEILRLWKSSMIKLPREIGRLIRLRMLDLSHSGIEVVPPNIISSLTKLEELYMGNTSINWEDVSSTFHNENASLAELQKLPKLTALELQIRETWMLPRDLQLVFEKLERYKIAIGDVWDWSDIKDGTLNTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLPHLNREGFTLLKHLHVQNNTNLNHIVDNKERNQIHASFPILETLVLLNLRNLEHICHGQPSVASFGSLSVIKVKNCVQLKYLFSFTMVKGLSHLSKIEVCECNSMKEIVFRDNDSSANNDITDEKIEFLQLRSLTLEHLKTLDNFASDYLTHHRSKEKYHDVEPYASTTPFFNAQVSFPNLDTLKLSSLLNLNKVWDENHQSMCNLTSLIVDNCVGLKYLFSSTLVESFMNLKHLEISNCPIMEDIITKEDRNNAVKEVHFLKLEKMILKDMDSLKTIWHRQFETSKMLEVNNCKKIVVVFPSSMQNTYNELEKLEVRNCALVEEIFELNLNENNSEEVMTQLKEVTLDELMKLKNNGVEILKEFLVFKI* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1640 1130 SUPERFAMILY RNI-like 895 1126 - -
Mtr1g1640 1130 Coils Coil 68 88 - -
Mtr1g1640 1130 Pfam NB-ARC domain 161 391 IPR002182 GO:0043531
Mtr1g1640 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 406 IPR027417 -
Mtr1g1640 1130 Gene3D - 308 396 IPR042197 -
Mtr1g1640 1130 Coils Coil 107 127 - -
Mtr1g1640 1130 SMART AAA_5 172 310 IPR003593 -
Mtr1g1640 1130 CDD AAA 157 308 - -
Mtr1g1640 1130 Gene3D Ribonuclease Inhibitor 466 706 IPR032675 -
Mtr1g1640 1130 Gene3D Ribonuclease Inhibitor 928 1110 IPR032675 -
Mtr1g1640 1130 Gene3D Ribonuclease Inhibitor 726 920 IPR032675 -
Mtr1g1640 1130 PRINTS Disease resistance protein signature 175 190 - -
Mtr1g1640 1130 PRINTS Disease resistance protein signature 248 262 - -
Mtr1g1640 1130 PRINTS Disease resistance protein signature 342 356 - -
Mtr1g1640 1130 PRINTS Disease resistance protein signature 544 560 - -
Mtr1g1640 1130 SUPERFAMILY L domain-like 464 1004 - -
Mtr1g1640 1130 PANTHER - 20 1109 - -
Mtr1g1640 1130 PANTHER RPP4C3 20 1109 - -
Mtr1g1640 1130 Gene3D - 140 302 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1640 Mtr-Chr1 21140150 21150483 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1640 174 480 WRKY Transcription Factor Family AT5G45050 24.127 1.20e-11 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1640 - - mtr:MTR_0006s0240 1845.09