Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1621 ATGTCAAGTAGTACTGGGGATACTCATTGGTGTTATAATTGCATGAGGCCGGTTCGATTGGGACGGATACATACTGTTTGCTCTAGTTGTGATGGGGGATTTGTTCAAGATCTCAATGATATGGTACATTCTAGTTATGGCGTGGACAATGTTGAAGAACTCGGACAAAGGCATCAAATGGATTCAATTCCCGAACACGCTCCAAGGTTTACTACTCCTTTGTTAATCTATGGTGGCCAAATACCATTCAGGTTTTCTAGACAAGGTGGCATTGATGCTCTCTTTAATGGGACACCAGGAACTGGTGTCACGATAGGTAACTCGGTTAATTATTTTACCGGTCCTGGAGTTGAAGAATTGTTAGAACAGCTTTCTGCTAATGACCGCAGAGGCCCCCCACCTGCATCGCGGTCATCTATAGATGCAATTCCTATTGTGAAGATATCGTCGAGGCATCTTCGATCAGATCCACATTGTCCAGTATGCCAAGATAAATTTGAGCTTGGGTCTGATGCAAGACGAATGCCATGTAAACATATGTTTCACTCGGATTGTATTGTACCATGGTTGGTTCAGCATAACACCTGCCCTGTTTGCCGTCAAGAATTGCCACAGCAGAGTGGAAGAAGGAGAAACCCTTTTTCGTTTTTGTGGCCTTTCGGCTCTTCTAATTCTAGAAGTAACGACGGAGCAACTGGAAGCAGCTCACTAACACCAGGTATACCTGAAAATAGCCAGAATGCACAACATTCTGGGTGGCCATTTGAGTGA 771 0.4423 MSSSTGDTHWCYNCMRPVRLGRIHTVCSSCDGGFVQDLNDMVHSSYGVDNVEELGQRHQMDSIPEHAPRFTTPLLIYGGQIPFRFSRQGGIDALFNGTPGTGVTIGNSVNYFTGPGVEELLEQLSANDRRGPPPASRSSIDAIPIVKISSRHLRSDPHCPVCQDKFELGSDARRMPCKHMFHSDCIVPWLVQHNTCPVCRQELPQQSGRRRNPFSFLWPFGSSNSRSNDGATGSSSLTPGIPENSQNAQHSGWPFE* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1621 256 Pfam Ring finger domain 158 200 IPR001841 -
Mtr1g1621 256 CDD RING-H2_RNF126_like 159 200 - -
Mtr1g1621 256 SUPERFAMILY RING/U-box 139 213 - -
Mtr1g1621 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 207 - -
Mtr1g1621 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 44 - -
Mtr1g1621 256 MobiDBLite consensus disorder prediction 223 256 - -
Mtr1g1621 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 206 IPR013083 -
Mtr1g1621 256 ProSiteProfiles Zinc finger RING-type profile. 159 200 IPR001841 -
Mtr1g1621 256 SMART ring_2 159 199 IPR001841 -
Mtr1g1621 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 3 44 - -
Mtr1g1621 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 55 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1621 Mtr-Chr1 20507828 20509473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1621 106 204 C3H Transcription Factor Family AT5G01980 43.564 9.00e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1621 K11982 - mtr:MTR_1g051105 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1621 1 20507828 20509473 Mtr1g1621 1 20507828 20509473 ECH