Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g1621 | ATGTCAAGTAGTACTGGGGATACTCATTGGTGTTATAATTGCATGAGGCCGGTTCGATTGGGACGGATACATACTGTTTGCTCTAGTTGTGATGGGGGATTTGTTCAAGATCTCAATGATATGGTACATTCTAGTTATGGCGTGGACAATGTTGAAGAACTCGGACAAAGGCATCAAATGGATTCAATTCCCGAACACGCTCCAAGGTTTACTACTCCTTTGTTAATCTATGGTGGCCAAATACCATTCAGGTTTTCTAGACAAGGTGGCATTGATGCTCTCTTTAATGGGACACCAGGAACTGGTGTCACGATAGGTAACTCGGTTAATTATTTTACCGGTCCTGGAGTTGAAGAATTGTTAGAACAGCTTTCTGCTAATGACCGCAGAGGCCCCCCACCTGCATCGCGGTCATCTATAGATGCAATTCCTATTGTGAAGATATCGTCGAGGCATCTTCGATCAGATCCACATTGTCCAGTATGCCAAGATAAATTTGAGCTTGGGTCTGATGCAAGACGAATGCCATGTAAACATATGTTTCACTCGGATTGTATTGTACCATGGTTGGTTCAGCATAACACCTGCCCTGTTTGCCGTCAAGAATTGCCACAGCAGAGTGGAAGAAGGAGAAACCCTTTTTCGTTTTTGTGGCCTTTCGGCTCTTCTAATTCTAGAAGTAACGACGGAGCAACTGGAAGCAGCTCACTAACACCAGGTATACCTGAAAATAGCCAGAATGCACAACATTCTGGGTGGCCATTTGAGTGA | 771 | 0.4423 | MSSSTGDTHWCYNCMRPVRLGRIHTVCSSCDGGFVQDLNDMVHSSYGVDNVEELGQRHQMDSIPEHAPRFTTPLLIYGGQIPFRFSRQGGIDALFNGTPGTGVTIGNSVNYFTGPGVEELLEQLSANDRRGPPPASRSSIDAIPIVKISSRHLRSDPHCPVCQDKFELGSDARRMPCKHMFHSDCIVPWLVQHNTCPVCRQELPQQSGRRRNPFSFLWPFGSSNSRSNDGATGSSSLTPGIPENSQNAQHSGWPFE* | 257 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g1621 | 256 | Pfam | Ring finger domain | 158 | 200 | IPR001841 | - | |
Mtr1g1621 | 256 | CDD | RING-H2_RNF126_like | 159 | 200 | - | - | |
Mtr1g1621 | 256 | SUPERFAMILY | RING/U-box | 139 | 213 | - | - | |
Mtr1g1621 | 256 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 55 | 207 | - | - | |
Mtr1g1621 | 256 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 3 | 44 | - | - | |
Mtr1g1621 | 256 | MobiDBLite | consensus disorder prediction | 223 | 256 | - | - | |
Mtr1g1621 | 256 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 206 | IPR013083 | - | |
Mtr1g1621 | 256 | ProSiteProfiles | Zinc finger RING-type profile. | 159 | 200 | IPR001841 | - | |
Mtr1g1621 | 256 | SMART | ring_2 | 159 | 199 | IPR001841 | - | |
Mtr1g1621 | 256 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED | 3 | 44 | - | - | |
Mtr1g1621 | 256 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED | 55 | 207 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g1621 | Mtr-Chr1 | 20507828 | 20509473 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g1621 | 106 | 204 | C3H Transcription Factor Family | AT5G01980 | 43.564 | 9.00e-24 | 97.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g1621 | K11982 | - | mtr:MTR_1g051105 | 548.895 |