Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1619 ATGTCCCTTGAAGAGACTCTAAGATCTCTCTCCCTTGACTACCTGAATCTCCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTTGAAGGTCGTTTGGTTCATGCTCATCGCTGCATCTTAGCAGCAAGGAGTCTTTTCTTCAGGAAATTCTTTTGTGGGCCCGACCCACCTTCGGGACTAGACCCAATAGGAGGAGGATCCTCTCGTCAGCCGACAGTACGACCTGGTGTCATTCCAGTGAACTCAGTCGGCTACGAGGTTTTCCTCCTCCTGTTGCAGTTTCTGTACAGTGGACAAGTTTCTATTGTTCCTCAGAAACATGAGCCTAGACCTAATTGTGGTGAGAGAGGGTGCTGGCATACGCATTGTACCTCAGCCGTTGATCTTGCCCTTGATACTCTAGCTGCCGCTAGATACTTTGGAGTTGAACAGCTTGCATTGCTCACTCAGAAGCAACTAGTGAGCATGGTAGAGAAAGCCTCAATAGACGATGTGATGAAAGTACTAATAGCTTCAAGAAAGCAAGAAATGCCCCAACTTTGGACAACATGTTCCCACCTTGTTGCCAAGTCTGGTCTCCCACCTGAAATCCTAGCCAAGCATCTCTCCATTGACGTAGTCGCCAAAATCGAAGAACTTCGTCTAAAATCCTCCTTAGCACGGCGCTCCTTAATGCCACTTCACCACCACCACCATCACCATCATCACCATGACTTCGGTGACCTCGAAGACCAGAAGATCCGAAGAATGAGACGGGCCCTTGACTCCTCCGATGTGGAACTAGTCAAACTCATGGTCATGGGAGAAGGCCTAAACCTTGATGAAGCATTGGCATTACACTATGCAGTTGAGAATTGTAGCCGAGAAGTGGTGAAAGCCCTGCTTGAACTCGGGGCTGCGGATGTTAACTACCCGGCTGGACCTGCCGGGAAAACTTCCCTTCATGTGGCTGCCGAGATGGTGTCGCCGGAGATGGTGGCAGTTTTGCTTGACCACCATGCAGATCCCACAGTTAGAACCGTTGACGGTGTCACACCTTTGGATATACTTAGAACCCTAACCTCTGATTTTCTCTTCAAAGGTGCTGTTCCTGGATTAAACCACATTGAACCAAACAAGTTAAGATTGTGTTTGGAACTTGTTCAATCTGCAGCTCTTGTTCTGTCACGTGAAGAAAACAATGCTAGTAACAATAATAACAACAACAACAATGCTTCTTCATCAGCAGCACCGGTTTACCCTCCAATGAGCGAAGATCATAGCAGCAGTAGCAGTGGCAACAACAATAATAATAACAACAGCATTGGTAACCTGAATTTGGATTCAAGATTGGTGTACCTCAACCTTGGTGCTACTCAAATGGGTGGTGATGATGATAATCGACACAACAATAGTCATAGAGAAGCCATGAATCGTCAAGGTGGTCATGGATGTGACCCATCAATGTATCATCACTCTCATGACTTCTAA 1479 0.4699 MSLEETLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPIGGGSSRQPTVRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLVSMVEKASIDDVMKVLIASRKQEMPQLWTTCSHLVAKSGLPPEILAKHLSIDVVAKIEELRLKSSLARRSLMPLHHHHHHHHHHDFGDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTSLHVAAEMVSPEMVAVLLDHHADPTVRTVDGVTPLDILRTLTSDFLFKGAVPGLNHIEPNKLRLCLELVQSAALVLSREENNASNNNNNNNNASSSAAPVYPPMSEDHSSSSSGNNNNNNNSIGNLNLDSRLVYLNLGATQMGGDDDNRHNNSHREAMNRQGGHGCDPSMYHHSHDF* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1619 492 Pfam Domain of unknown function (DUF3420) 195 254 IPR024228 -
Mtr1g1619 492 SUPERFAMILY Ankyrin repeat 271 355 IPR036770 -
Mtr1g1619 492 Gene3D - 245 360 IPR036770 -
Mtr1g1619 492 Pfam Ankyrin repeats (3 copies) 260 342 IPR002110 GO:0005515
Mtr1g1619 492 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 492 IPR044284 GO:0099402
Mtr1g1619 492 MobiDBLite consensus disorder prediction 455 492 - -
Mtr1g1619 492 MobiDBLite consensus disorder prediction 462 476 - -
Mtr1g1619 492 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Mtr1g1619 492 SMART BTB_4 25 160 IPR000210 GO:0005515
Mtr1g1619 492 MobiDBLite consensus disorder prediction 395 439 - -
Mtr1g1619 492 SUPERFAMILY POZ domain 10 158 IPR011333 -
Mtr1g1619 492 SMART ANK_2a 312 341 IPR002110 GO:0005515
Mtr1g1619 492 SMART ANK_2a 277 307 IPR002110 GO:0005515
Mtr1g1619 492 Gene3D Potassium Channel Kv1.1; Chain A 3 193 IPR011333 -
Mtr1g1619 492 CDD BTB_POZ_NPR_plant 8 160 - -
Mtr1g1619 492 PANTHER REGULATORY PROTEIN NPR5 1 492 - -
Mtr1g1619 492 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Mtr1g1619 492 ProSiteProfiles Ankyrin repeat region circular profile. 312 338 - -
Mtr1g1619 492 ProSiteProfiles Ankyrin repeat profile. 312 344 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1619 Mtr-Chr1 20472639 20476721 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mtr1g1619 BTB 2.5e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1619 K14508 - zju:107433767 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2554 7 42203622 42207284 Mtr1g1619 1 20472639 20476721 PCT