Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1616 ATGAAATGCAGAGCTTTTGATTGTTCTCAATTTATTGATGGAGGTCATGAAGAAGGGGCAGACATTGGAGAAGATGTTATGGTTGAAGAGGGGGAATACAATGGTAACATGGAAAATGATGGAAGTGGTTACGAAAGCGGACACAATGGTGAGTTTGAGCAAGATGGAGGTAGTGGTCAACCCGGAGAAGATGAAGGGGTGAACTATGGTGACATGGAAGAAGATGGAAGTGATGAAGAAGGAGTAGACTATGGTTCCATGGAAGATGGAAGTGATGAAGAAGGGGTAGACTATGGTGATATGGAAGAAGATGGAAGTGACGATGAAAACCAACATATCCAAGTTGATAGTGCTGATGACATTGTGGCATTGGACCTGAGTGGTTTAGGGCCTCTATTTGTAAGGAGAATTGAGTTTGGAAGCCAAGACATTGCATATGAGTTCTATAAATCCTATGGAAGAGCGAATGGATTTACAGTTCGCAAAGGCAAGTTGCTTTATTGCAAATCGGGAGAAGTAGTGCAACTCACATTTCTTTGCCATAGAGAAGGATATAGGATAAAAGGAATAACTGAGGCGAATAGAAAGCATCGGGAAAAACCTTATACTCGATGTGGATGTCAAGCTATGTTTCGGGTACACATAAATAGTTTCACAAATCGCTGGTCTGCTACAGTTTTTAATAACCAGCACAACCATGAGCTAGCATCGCAGGAACATTGTGGACTGCTATCTTCACACTGTGTAATGACAGATTCAGACATAATGCAAATGAACAATATGTTAAAAAGTGGTATTTTACCTAATCGCATATATGCTTCATTTGCAAATCAAGCAGGAGGATATGATAAAATTGGTTTCCGGAGGAAAGATCTGTATAATCAATTAGCAAAACAACGACGTCTGCGAAGGTCAGATGCAATTTCTGCATTAAGTTATCTTCGTGGATTGGGTTCAAATGATCCTATGATGTTTTTCAAGCACACTACTGATTCTACAGGTAGACTACAACACCTGTTTTGGTGTGACGGAAAAAGTCGTCTTGATTACCAACTTTATGGCGACGTAGTCGCATTTGATGCAACATATGGTAAGAACCAATACCATTGCCCTTTAGTTGTGTTTGCTGGTGTGAATAATCATAACTCTACTATTATTTTTGGTGGAGCTATTGTTGCTGATGAGAAGGAAGAAACTTATGTCTGGGTGCTTTCACGGTTCTTGGAAGCAATGTCTGGAAAGTCGCCAACTGCTGTAATCACTAATGGTGATTTATCAATGAAGAATGACATAAAACATGTGTTTCCAAATGCTTATCATAGACTGTGTGCGTGGCACTTGATTTGCAATGCATCGTCCAATATAGGTGATCCTGCATTTGTGGATGAATTTAGAAAGTGTATGAAACTGTTGATTCATTTGGATTGCATGACAACAATTGGATCAAAGAAACATATATGA 1461 0.3949 MKCRAFDCSQFIDGGHEEGADIGEDVMVEEGEYNGNMENDGSGYESGHNGEFEQDGGSGQPGEDEGVNYGDMEEDGSDEEGVDYGSMEDGSDEEGVDYGDMEEDGSDDENQHIQVDSADDIVALDLSGLGPLFVRRIEFGSQDIAYEFYKSYGRANGFTVRKGKLLYCKSGEVVQLTFLCHREGYRIKGITEANRKHREKPYTRCGCQAMFRVHINSFTNRWSATVFNNQHNHELASQEHCGLLSSHCVMTDSDIMQMNNMLKSGILPNRIYASFANQAGGYDKIGFRRKDLYNQLAKQRRLRRSDAISALSYLRGLGSNDPMMFFKHTTDSTGRLQHLFWCDGKSRLDYQLYGDVVAFDATYGKNQYHCPLVVFAGVNNHNSTIIFGGAIVADEKEETYVWVLSRFLEAMSGKSPTAVITNGDLSMKNDIKHVFPNAYHRLCAWHLICNASSNIGDPAFVDEFRKCMKLLIHLDCMTTIGSKKHI* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1616 486 MobiDBLite consensus disorder prediction 67 107 - -
Mtr1g1616 486 MobiDBLite consensus disorder prediction 29 109 - -
Mtr1g1616 486 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 138 467 IPR031052 GO:0006355
Mtr1g1616 486 Pfam MULE transposase domain 356 448 IPR018289 -
Mtr1g1616 486 PANTHER OS02G0262500 PROTEIN 138 467 - -
Mtr1g1616 486 Pfam FAR1 DNA-binding domain 147 236 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1616 Mtr-Chr1 20419416 20420876 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g1616 MULE 4.6e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1616 - - ccaj:109791994 382.489