Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1612 ATGTCATTACATCATCCAAAAGAGTTCTTGAAGATTGTTCAACACCATGAACTGCATAACGGAGAGCTTAGGGTTCCCAAGAAATTTGTGGAGAAATATTGGAAAAGAATACCAAATCCAGTAATTCTTAGACTCCCAAATGGTGCTCAAAAGGAAATATTTTGGGTGGAGCGTGACGGTGATATTTGGTTTAAGAGAAATTGGGAAAATTTTGCAAAGTCTCTAAAACATGGATATGCTTTAGTTTTCAAATATTTAGGTGGCCCATATTTTAAAGTTAAGATATTTGGTCACAATACATTGGAAAAAGACTATTCCAATATAAAATTCATAGATGAAAGTTGTGAAGGTAGAGAAGAAGTTGTTCAAGAAGTTCAAAGGAGAAAAAATGGCAAGAGAAAAATTAGTCAGCAAAAAATCACAGGTAGTAACAAAGGAGGCATAATTAAGAAGGCTAAAAAATGCTCAACAATTAGTGAGAAAGAAAATAATGAAAATCCAAGTTTTGAACTTGAAATGTCACAAACTTACGCCCATGGCTATACTTTGAGGATACCAAGTGACTTTTCAAGAACATATTTGAATGAAAACCTTAAAGGGTCATCTGGAAGCATTAGATTTGGTGAGAACATGCCTATGAAAGTGAAGGTGAGGTTTCAAGATATCAAGAATAATAGAACATGCATTGTGACTAGTGGTTGGAAGCCATTTGCCAAAAAATATAACTTACAAGTTGGTGATAAATGTAAATTTGTGATGACTCAACTTCAACCACTTTCATTCACCATAACTATTACCCAAGCCAAAGGTTATGAAGGAATGATCTCCTGTGATGATGATATTGGGAAGAGAATAGGCATTGAAGGAAGTTCAAGGAGCTGCCATGTTCTCCCAACAGACTTGGAAGGTAGTAATGTGATGAAACCGATCACAATTGAGATTCGTGTGAACTCTACCTACCCGTATATTGGACATGAGTTTTTTAAGAGACATAAAGAGTGTCATGGAGAATTCGTGGAGTTGACAAATGGGGGAAAATCATGGTTGGTAAAAGTGAAATATTATCAGTCGACAGGATTTAGGTTCTATGCAGGTTGGCAAAAATTTAAGCAAGATTGCAAATTGAAGATTGGAGATACTTGCAAATTGAAGTTGATTGATGAAAAAATGTCTGTGTTTCAAGTTTCAATTGAAAGAATGCACCACCACTAG 1212 0.3523 MSLHHPKEFLKIVQHHELHNGELRVPKKFVEKYWKRIPNPVILRLPNGAQKEIFWVERDGDIWFKRNWENFAKSLKHGYALVFKYLGGPYFKVKIFGHNTLEKDYSNIKFIDESCEGREEVVQEVQRRKNGKRKISQQKITGSNKGGIIKKAKKCSTISEKENNENPSFELEMSQTYAHGYTLRIPSDFSRTYLNENLKGSSGSIRFGENMPMKVKVRFQDIKNNRTCIVTSGWKPFAKKYNLQVGDKCKFVMTQLQPLSFTITITQAKGYEGMISCDDDIGKRIGIEGSSRSCHVLPTDLEGSNVMKPITIEIRVNSTYPYIGHEFFKRHKECHGEFVELTNGGKSWLVKVKYYQSTGFRFYAGWQKFKQDCKLKIGDTCKLKLIDEKMSVFQVSIERMHHH* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1612 403 ProSiteProfiles B3 DNA-binding domain profile. 306 401 IPR003340 GO:0003677
Mtr1g1612 403 CDD B3_DNA 307 399 IPR003340 GO:0003677
Mtr1g1612 403 SUPERFAMILY DNA-binding pseudobarrel domain 319 399 IPR015300 -
Mtr1g1612 403 SMART B3_2 9 99 IPR003340 GO:0003677
Mtr1g1612 403 SMART B3_2 169 269 IPR003340 GO:0003677
Mtr1g1612 403 SMART B3_2 310 396 IPR003340 GO:0003677
Mtr1g1612 403 ProSiteProfiles B3 DNA-binding domain profile. 168 269 IPR003340 GO:0003677
Mtr1g1612 403 SUPERFAMILY DNA-binding pseudobarrel domain 164 263 IPR015300 -
Mtr1g1612 403 CDD B3_DNA 167 265 IPR003340 GO:0003677
Mtr1g1612 403 Gene3D - 2 100 IPR015300 -
Mtr1g1612 403 SUPERFAMILY DNA-binding pseudobarrel domain 7 99 IPR015300 -
Mtr1g1612 403 CDD B3_DNA 7 96 IPR003340 GO:0003677
Mtr1g1612 403 PANTHER B3 DOMAIN-CONTAINING 4 267 - -
Mtr1g1612 403 PANTHER B3 DOMAIN-CONTAINING 307 400 - -
Mtr1g1612 403 Pfam B3 DNA binding domain 180 258 IPR003340 GO:0003677
Mtr1g1612 403 Pfam B3 DNA binding domain 322 391 IPR003340 GO:0003677
Mtr1g1612 403 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 267 - -
Mtr1g1612 403 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 307 400 - -
Mtr1g1612 403 Gene3D - 297 402 IPR015300 -
Mtr1g1612 403 Gene3D - 147 271 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1612 Mtr-Chr1 20342987 20346029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1612 7 124 B3 DNA Binding Superfamily AT1G49475 32.231 1.82e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1612 B3 4.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1612 - - mtr:MTR_1g050845 743.036