Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1601 ATGGCGAAGGGTGACGATTCTGTACTGAAAAAACATAACAAAAAGCTCAGGAAAAAACAAAACAGCAAGAATTCCGTCTCTGCTAAGATTGCCGCTGTTATCGCCTCCAAGAAGCGCCGCAAGGCCGGAAAACGCCGCATCTGCGAGGGAATGTGCTTTAGCTTACCTTCTCTAGATGATCCATTCAATGATAGACAAGGGAAACCGGAATTTAAAAAGAAGGATCCTAAAAAGAAAACATCTTCCCAAAAAGAGAAGACAACTCCGGTTAAAGGGAAGAGTGTACCCGGGGAGAAAGGCACCGCAGTTGGTAGGAATGGCGCAAACAATAAAAGTGAGATGGTGGAAGTTTGCTGCGGTGAACAGCATGATAATGAAGTTTCAGACTTCCCTTCCAAATTTGTTTTTTGGTGTCTGAGTGCAATTGAAAACGCACTCAGACATGACGATGCTTACACGGATGGAGAGGGAAACTCTTTCTTTCTTAACCCATGGGGATTAGAATTTTCAAAGCATTTTTCTACTGGTAAAGATCTGATTGACACCGGTGGAACCTTTGCTACTACTGAGCAAATTGCATGGATGGTTTCCGCGGCAGCTGATATTTTTGTTAGAAAAGAGAAACAAGGCTTATCATTAGACACCCCCTTTCTTTTGTTCCTCGTCCCTTCCGAAAAAAAAGCTGGCCAGGTCCGAACAGTTTGCAAGCCTTTGAAATCTGTAGGAATACATACAGTGAGTGTTCATCCGGGTGCTTCCTTAGATCATCAGATTCAAGGTCTGAAAAGTTGTGAGCCTGAATTTCTCATTTCTACTCCTGAGAGGCTCTTGGAGCTTGTTTCATTGAAGGCAATTGATATTTCTGGCATCTCTATGCTGGTTATTGATGGGTTCGATGCTATTTGTAAAGCTGGCCACGCTGATGCAATAAAATCCATCAAGAAGTTTATTTCTGGAAATCCTAGTCTTGTGGTTTTCAATGATAGCTTCAACCATACATCTATCCCAGTGGTTCGGCATCTTCTGACGGGACCTATTTGTAGAATATCTATCAATAATTCAATTGCTAGCCTAAGTTCGTGCATTGTACAGTCTGTTCAAGTGTGTACATCAGACGAAGATAAACTTGTTAAGAGCATTGAAGTCCTGCGTCAATTTCGGAGCAGCCAGACTCATAGTTCAAACCTTCTATATATTTTGAGGAAGGATGTCAAGTGCCATAAATTGGTGAAGACTCTCAAATCCATGGGTTGTTCCACGTCACTCGATTCTGATGCAGCAACTATAAATGATAGTGTGGATTCAAACAGGAGACTGGTTACAATGATTGATTTGGAGGATATCTCTACTTTGGATATAGGGATGTATGATGTAATAGTCCTACCTAGTCTTGTACCCTCTATGGACACTTACGAGCATATTTTGACAAACATGGCCCGTCAAAGTGTCAATGGTATTTTGCATGGTTTCTTAACAAAAAGCGATACAGAACATGCTGGACCACTCATCTCAATTCTTGAACAATGTGGGCAGGAAGTGCCCGAGACCTTGAAAGATCTTCATCAGGCATCAAACATATGTCGGAAGATTGAAAGTTGA 1599 0.4178 MAKGDDSVLKKHNKKLRKKQNSKNSVSAKIAAVIASKKRRKAGKRRICEGMCFSLPSLDDPFNDRQGKPEFKKKDPKKKTSSQKEKTTPVKGKSVPGEKGTAVGRNGANNKSEMVEVCCGEQHDNEVSDFPSKFVFWCLSAIENALRHDDAYTDGEGNSFFLNPWGLEFSKHFSTGKDLIDTGGTFATTEQIAWMVSAAADIFVRKEKQGLSLDTPFLLFLVPSEKKAGQVRTVCKPLKSVGIHTVSVHPGASLDHQIQGLKSCEPEFLISTPERLLELVSLKAIDISGISMLVIDGFDAICKAGHADAIKSIKKFISGNPSLVVFNDSFNHTSIPVVRHLLTGPICRISINNSIASLSSCIVQSVQVCTSDEDKLVKSIEVLRQFRSSQTHSSNLLYILRKDVKCHKLVKTLKSMGCSTSLDSDAATINDSVDSNRRLVTMIDLEDISTLDIGMYDVIVLPSLVPSMDTYEHILTNMARQSVNGILHGFLTKSDTEHAGPLISILEQCGQEVPETLKDLHQASNICRKIES* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1601 532 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 519 - -
Mtr1g1601 532 Coils Coil 9 29 - -
Mtr1g1601 532 MobiDBLite consensus disorder prediction 63 86 - -
Mtr1g1601 532 Gene3D - 207 358 IPR027417 -
Mtr1g1601 532 Pfam DEAD/DEAH box helicase 211 317 IPR011545 GO:0003676|GO:0005524
Mtr1g1601 532 MobiDBLite consensus disorder prediction 1 107 - -
Mtr1g1601 532 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 ISOFORM X1 1 519 - -
Mtr1g1601 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 346 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1601 219 520 Eukaryotic Initiation Factors Gene Family AT1G72730 19.048 6.11e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1601 - - gmx:100809099 704.516