LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g1598	ATGTACGGCGGTGGTGAGCGTGAATGCGAATCTGAGAGGACGATGATGATTATGCAGAACGACGAAGATGAAGAAGACGAAGAAGGTTCTTCTTCTTCTTTCAAGAGCTGGGCAAAGCAAACTGAAGAGAGCTATCAATTGCAGCTCGCACTTGCTCTTCGCATTTCATCTCACTCTGCTTCTTCCGCTCAATCCAATCGCTTCTTGGATTTGGAATCCACCTCTTCTCCTTCTCCTTCGTCTTCTTCTTCCGATTCTCCCCAATCACTTTCACACCGTTTTTGGGTAAATGGTTGTTTGCAATACTCTGACAAAGTTCTAGACGGATTTTACCTAATTCATGGGATGGATGCATATACATGGACTATAAGTACCGATATGCAGAATGTTGGTATGATTCCATCATTTGAATCACTAATGTCGGTTAAACCGTGTGATAACTCGTCAGTTGTAGTCGTTGCTATTGACAAATCAAGAGACCCTGCCTTGAGAGAACTGCAAAGTGGGGTATTAAGTCTTTCAAGTAACTGGATTACCATCAAAGATGCAACTGATCAGCTCGCAAATCTTGTTTGTAGTAGGATGGGGGGAGGATCTTCCGATGAGGAAAATTTAGGTGCGCGCTGGAAGGAATGCTCTGATATTCTTAAAAGCTGTCTGCAGTGTATCATTCTTCCAATTGGAAGCTTACCCGTTGGCCTTTGTGTTCATCGAGCATTGCTCTTTAAAGTGTTAGCGGATTTAATCAACCTACCGTGTCGAATCGCTAAGGGATGCAAGTATTGTAGAAAGGACACTGGTGCTTCTTGTATAGTGCAATTTGGTTCTGACAGGGAGTATATGATTGATTTAGTAGGAAGGCCCGGAGATACATGCCAACCTGATTCTTCAGTGAATTCTGCATCTTCGATGTTGATCCCTTCACCATTATGTCATCCAAGGTTCAAGCCAGTTGAAACAGCTGAATATACAAAGACAATGGCCCAATTGTATTTCTTGGACAATCAAGCACTGCATCTTGTATTTGATACCACGTCAGGAGGTACTGTTGATTGTAGGGACAATGTGGATCTTCAGCAAACTGAAATGTTTGGTGCAAACTATGCTGGTGGGAACAACCATATAGGTGCTTTCAGTCCTGGTACCGAGGAACATGTGTCTTTCAATGAAGCAAACCAATCAGTAGTGAATTATTCGAGTCATGAAGTTGACCTTGAGGAGGAGGATCTGGACATTCCGTGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTACTTCGTGCGGACTGGCGTGGCTCTGATGTTGCTGTGAAGATACTTAAGGTGCAAGGTTTTGATTCCGAACGATTTGAAGAGTTTCTAAAGGAGGTCACACTCATGAAGCGCCTACGTCATCCAAACATTGTACTTCTAATGGGCGCTGTTATCCAGCCACCAAAGTTATCAATAGTAACAGAATATTTATCAAGAGGAAGCTTGTATGAATTTCTGCAGATGCCAGGTGTTGGTTCCTCAATCAGCGAGAAGCGTCGTTTAAGTATGGCTTATGACGTGGCAAGTGGAATGAATTATCTTCATCAAATGAAACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTGGATGATTCATACACTGTTAAGGTATGTGACTTTGGCCTTTCACGCACAAAGGCAAATACATATCTTTCATCTAAAACAGCTGCTGGAACTCCTGAATGGATGGCACCAGAAGTCATCAAAGGTGAACTATCAAATGAAAAATGTGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTGGTGACCCTTCAACAACCATGGAGGCAGTTAAATCCTTCACAGGTTGTTGCAGCTGTTGCTTTTATGGGCAAAAGGCTAGAAATTCCGAGGCATGTGAATCCTCAAGTGGCTGCCTTAATTGAGCTCTGCTGGTCTACGGAACCAAGGAGGCGGCCTTCTTTCTCCTACATTATGAAATGTTTGCAGCAAATAATTGCCAATGCTAAAGAGTGA	2043	0.4278	MYGGGERECESERTMMIMQNDEDEEDEEGSSSSFKSWAKQTEESYQLQLALALRISSHSASSAQSNRFLDLESTSSPSPSSSSSDSPQSLSHRFWVNGCLQYSDKVLDGFYLIHGMDAYTWTISTDMQNVGMIPSFESLMSVKPCDNSSVVVVAIDKSRDPALRELQSGVLSLSSNWITIKDATDQLANLVCSRMGGGSSDEENLGARWKECSDILKSCLQCIILPIGSLPVGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDTGASCIVQFGSDREYMIDLVGRPGDTCQPDSSVNSASSMLIPSPLCHPRFKPVETAEYTKTMAQLYFLDNQALHLVFDTTSGGTVDCRDNVDLQQTEMFGANYAGGNNHIGAFSPGTEEHVSFNEANQSVVNYSSHEVDLEEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLKEVTLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYEFLQMPGVGSSISEKRRLSMAYDVASGMNYLHQMKPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTYLSSKTAAGTPEWMAPEVIKGELSNEKCDVFSFGVILWELVTLQQPWRQLNPSQVVAAVAFMGKRLEIPRHVNPQVAALIELCWSTEPRRRPSFSYIMKCLQQIIANAKE*	681

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mtr1g1598	680	ProSiteProfiles	Protein kinase domain profile.	417	675	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Mtr1g1598	680	SMART	serkin_6	417	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Mtr1g1598	680	MobiDBLite	consensus disorder prediction	1	37	-	-
Mtr1g1598	680	ProSitePatterns	Protein kinases ATP-binding region signature.	423	444	IPR017441	GO:0005524
Mtr1g1598	680	CDD	STKc_MAP3K-like	423	669	-	-
Mtr1g1598	680	Pfam	Ethylene-responsive protein kinase Le-CTR1	88	290	-	-
Mtr1g1598	680	Gene3D	Transferase(Phosphotransferase) domain 1	496	680	-	-
Mtr1g1598	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	538	550	IPR008271	GO:0004672\|GO:0006468
Mtr1g1598	680	Gene3D	Phosphorylase Kinase; domain 1	410	495	-	-
Mtr1g1598	680	PRINTS	Tyrosine kinase catalytic domain signature	491	504	IPR001245	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g1598	Mtr-Chr1	20191361	20203790	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr1g1598	37	678	MAP Kinase Kinase Kinase	AT5G03730	57.681	0.0	701

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Mtr1g1598		PK_Tyr_Ser-Thr	1.8e-70	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g1598	K14510		-	gmx:100807496	1093.95

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