Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1562 ATGTTTCATTATATTACATTGTTTTTAGCAATTCTCTTCATCATATTTTACAATATATCGAGAAGCAAAAAAAATGTAACTCTACCAAATTGGCCAATAATTGGCATGCTACCATCAGTTTTGCATAACCTATCCAAGATTCATGATTATGCAACCTTAGTTTTGAAACATCATGGAGGTACTTTTCAGTTTAAAGGACCTTGGTTCACAAATCTTGCCACAGTTATCTTCACCAGTGATCCCATGAATGTGCACCACATCATCAGCAAGAATTTCAGTAACTATGGGAAAGGATCTGACTTCCATGAGATTTTTGAAGTTCTCGGTCTTGGTATTTTCAATTTGGATTCCAATGAATGGAAACAAGAAAGGGCACTATTTCATTCATTGCTCAAAAACAAAAACATTGAGATATTCTATCAACAAAACATTCAAAAGAAGCTAGAGAATTGTTTGTTACCATTTCTTGATCATGCATCCAAAGAAGTAAAAGGTCTTGATTTACAAGATGTTATTGAGAGGTTTACCTTTGATATTACTTGCATTTTTTTATTTGGATTCGATCCTAATTCCCTTCCTTACAAGTACAACGAGTTATCGGATATTGCTTATGTAAAAGCTGTTAGTGTCCTTGAGGATTTGCTATTGTATAGACACTATATGCCAAAATGTATTTGGAAGCTGCAAAAGTGGCTACACATTGGTCAAGAGAAGAAGGGCACGGTAGCTAAAGAAAATCTTCACGAATTCTTGAACAAATGTATATCTTATTACAAAGGTGATGAAGAGAAAAGAATACTCGAAAGAAATGAAGACGCGGATGAATCTCATTATTGCCTGGTAAAAGAACTAATGAAGGAAAGATTGGGAAAGGGCGAAACGAATGAGATGTATATTAGAGACACTGCTCTCAATCTCTTGGCTGCAGGTAATGGAACAATTAGTTCGGGTCTCAATTGGTTCTTTTGGCTCGTATCAACTCATCCTATTGTCGAAGCAAAAATTATTCAAGAGATCAAGGTTAACTGTTTAACAAAAGAGGATAATTTGATCACAAATTTTAGTGTGAAAGAGCTTGATAAGCTAGTTTATCTTCATGGAGCTATATGTGAAGCCTTAAGGCTTTATCCACCTGTACCATTTGAACACAAGTGTGCAGTTAATTCCGATATACTACCTAGTGGAGACCATGTTAGTCTAAATACAAAGTTAATATACTCTTTGTATGCAATGGGAAGGATGGAACAAATATGGGGTGATGATTGCCTAGAATTTCGGCCTGAGAGATGGATATCGGATAGAGGACAAATTATACATGTACCATCGTACAAGTTCATAGCGTTTAATGCAGGTCCGAGAAGCTGTCTCGGAAAAGATATTACTTTCCTTCAAATGAAAATGGTTGCAGCTGCTGTATTATGGAAGTTTCGCATACAGGTCGTGGAAGGTCACATTGTTACTCCAAAGGTTTCTGTGATTCTTCGTATTGAAGGCTTTACGGTCAATCTTAGTAAGAGGTGCACTTGA 1527 0.3608 MFHYITLFLAILFIIFYNISRSKKNVTLPNWPIIGMLPSVLHNLSKIHDYATLVLKHHGGTFQFKGPWFTNLATVIFTSDPMNVHHIISKNFSNYGKGSDFHEIFEVLGLGIFNLDSNEWKQERALFHSLLKNKNIEIFYQQNIQKKLENCLLPFLDHASKEVKGLDLQDVIERFTFDITCIFLFGFDPNSLPYKYNELSDIAYVKAVSVLEDLLLYRHYMPKCIWKLQKWLHIGQEKKGTVAKENLHEFLNKCISYYKGDEEKRILERNEDADESHYCLVKELMKERLGKGETNEMYIRDTALNLLAAGNGTISSGLNWFFWLVSTHPIVEAKIIQEIKVNCLTKEDNLITNFSVKELDKLVYLHGAICEALRLYPPVPFEHKCAVNSDILPSGDHVSLNTKLIYSLYAMGRMEQIWGDDCLEFRPERWISDRGQIIHVPSYKFIAFNAGPRSCLGKDITFLQMKMVAAAVLWKFRIQVVEGHIVTPKVSVILRIEGFTVNLSKRCT* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1562 508 SUPERFAMILY Cytochrome P450 29 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 Pfam Cytochrome P450 29 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Mtr1g1562 508 Gene3D Cytochrome P450 15 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 PANTHER CYTOCHROME P450 FAMILY PROTEIN 12 498 - -
Mtr1g1562 508 PANTHER CYTOCHROME P450 12 498 - -
Mtr1g1562 508 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Mtr1g1562 508 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1562 Mtr-Chr1 19853075 19854815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1562 7 506 Cytochrome P450 AT2G23180 40.909 8.69e-144 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1562 - - cam:101494575 709.523