Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1560 ATGAAGAATTCTCTTTCAGATCAAGGTTTTTACATTGAAAGTGATGAAGATGAAGAGAAGGTGTTGGGAAAAGGAGAGAATGATGGAAATGAATCAGATTTTTCCAATGACTCTGATGAGAATGAAGGAGAGAGGAGACCCAGTTCTTACAGCATGGCATGGCCTCAAAGTTACAGGCAATCCATTGATCTGTATGGTAGCGTGCCATCGCCGAATATAGGATTTCTTGGAACGACGTCATTGGCAAGATTAGGCAGTTCTTTTCTTGGTTCAACTTTGACAAGGAGGCCAACTGCTGAAACTTTACAGCCAGAGAGAAAGCCTCTGCTACCACCGTCGGTCGACGAGCAGCATCGCCGTAGCTCTCAGATATTGCTTCCTCCCCTACCATCTAGGAAGTCTTCAATTAGGAAGGATATTTCCAAGATATCTCATGAAGTTCATTTTCCTGGTCAATGCACTTTTGGACAAGCTGTGCTTAATGGCATAAATGCTCTTTGTGGGGTTGGAATCCTTTCAGTCCCTTATGCTCTCAAAGAAGGTGGTTGGGCTGCACTTTCAATCTTACTGATATTTTCAGTATTTTCCTTTTACACTGGCTTGCTGTTGCGTTATTGCTTGGACAGTCAACCTGGACTTGAAACTTATCCCGACATTGGCCAAGCTGCTTTTGGTACTTATGGACGTGTTGTCATTTCGGTGATATTATACATGGAATTATATGCTTGTTGCATTGAATACATAATTCTCGAAAGTGACAATCTATCTTCATTATTTCCAAATGCACACTTAAGTTTCGGTGGATTTGAATTGAATGCACACATTCTGTTTGCAATCTTGAGCACATTGGCTATTCTTCCAACCGTTTGGCTCCGGGACCTTCGCATTCTAAGTTACATATCAGCTTGCGGAGTGATTGCAACGGTTGTAGTGGTTCTGTGCTTGTTGTGGGTCGGAGTGGTAGATGATGTTCCCATGCATACAGAAGGAACAATAACACTGAGGCTTTCAACATTCCCTGTTGCTGTTGGTCTCTATGGTTACTGCTTCGCAGGACATGCTGTATTCCCAAATCTGTATACAGCTATGGCAAATCGAAATCAATTCCCTAAAGTACTCTTGACTTGTTTTGCTATTTGTACAACTATGTATTTCACCGTAGCTGTTGTGGGATACACAATGTTTGGAGAAAATACGCTGTCTCAGTATACTCTTAACATGCCTCGAGGATTAGTAGCCTCCAAGATTGCTGTGTGGACTACGGTGGTTAATCCATTTACCAAATATGCTTTGAGTCTAACTCCAGTAGCATTGTCACTAGAGGAATTGATACCACCAAATAATCCAAACTTTCAGTTCTATTCCATCGGCATCAGAACAGCACTAGTGGTTTCTACACTGCTTGTTGGTCTTTCAGTTCCCTTTTTCGGTTTGGTAATGTCATTAATTGGATCCTTGCTCACAATGTTTGTTTCCCTTATTCTACCATCTGCTTGTTTCCTAAGCATTAAGGGAGGCAGAATCAAGCGCTCTCAGGTACTACTATGTGTTACAGTGGTTATAGTAGGTCTTGTATCATGCGGTTTTGGATCATACTCAGCCATCTCGGAGATGATTGCGGAAATGTTTGCATGA 1635 0.419 MKNSLSDQGFYIESDEDEEKVLGKGENDGNESDFSNDSDENEGERRPSSYSMAWPQSYRQSIDLYGSVPSPNIGFLGTTSLARLGSSFLGSTLTRRPTAETLQPERKPLLPPSVDEQHRRSSQILLPPLPSRKSSIRKDISKISHEVHFPGQCTFGQAVLNGINALCGVGILSVPYALKEGGWAALSILLIFSVFSFYTGLLLRYCLDSQPGLETYPDIGQAAFGTYGRVVISVILYMELYACCIEYIILESDNLSSLFPNAHLSFGGFELNAHILFAILSTLAILPTVWLRDLRILSYISACGVIATVVVVLCLLWVGVVDDVPMHTEGTITLRLSTFPVAVGLYGYCFAGHAVFPNLYTAMANRNQFPKVLLTCFAICTTMYFTVAVVGYTMFGENTLSQYTLNMPRGLVASKIAVWTTVVNPFTKYALSLTPVALSLEELIPPNNPNFQFYSIGIRTALVVSTLLVGLSVPFFGLVMSLIGSLLTMFVSLILPSACFLSIKGGRIKRSQVLLCVTVVIVGLVSCGFGSYSAISEMIAEMFA* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1560 544 MobiDBLite consensus disorder prediction 95 122 - -
Mtr1g1560 544 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 22 541 - -
Mtr1g1560 544 PANTHER OS05G0424000 PROTEIN-RELATED 22 541 - -
Mtr1g1560 544 MobiDBLite consensus disorder prediction 15 31 - -
Mtr1g1560 544 MobiDBLite consensus disorder prediction 1 52 - -
Mtr1g1560 544 Pfam Transmembrane amino acid transporter protein 153 535 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1560 Mtr-Chr1 19774084 19779840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1560 1 477 Amino Acid or Auxin Permease AAAP Family AT2G39130 65.289 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1560 K15015 - gmx:100798108 823.542