Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1549 ATGTCTATGTTGGATCTCAATATTGTTGACATCATCCATGTTGATGATAACTCAACCAATGTTCAAAAGAAGTTGCAACTTCTAACTTCTCCTTCTCAAATATCAGATTCTAGAACCTCCAACTCTTCTATTTGGAATCCTGCAGAGGAAGATTCCTCAAATAATTCCTCTCCTTTCATATTTGACCTATTGAAGAAAGAAAAAGATGTCTCACAAATAGTCAAAGAAGAAAAGAAAGAACCAATCACAAGGACACTTTTCCCTGTGAGTGCTGATAGAGGAGGTAGATTATCTGATTATTCCATGACTCAAAGGATGAACTTTGATGAGCAAAATGGACACAGTATCTTGCAGCAAAAGCAACCTCAAGTTAGAAAAAATAGAAGAGGACCAAGGTCTCGAAGCTCGCAGTACCGGGGTGTTACCTTCTACCGTAGGACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCAAGAGCATATGATAGGGCTGCTGTTATGTTTAGGGGAGTTGATGCTGATATAAACTTTAATTTGAGTGATTATGAGGACTTGAAACAGATGAGAGGTTTGAGCAAGGAAGAATTTGTCCTAAGGCTTCGTAGAAAAACCAATGAAAACTCAAAGAGAAGTTCAACATATAGAAGGACACTATCTCTTAACAAATATGGTCAAGGAGATCCACAAATTATTACACCATTTGTGGCCAAAGAATTTTGTCATAAGTCACCCATCAAGCGTGATCATGAAGTAGAAACTAGTTGTAAGCCCTCTAGTATTTATAAGGGAGAGATAGTTGCAAATTCTAACAAAACAGGCACTTTACATAATCTTGATTTGAGTCTAGGGATACCCAAAGAAAGAGGAACAATGCAGGAGAAGGGTTTGGTAAACATTAAAAAAGAAGTTCCATTGCAAGTATTTTCCAACTTGGCCAGGAAATTTTGCAGTAATGGCAGCAACATTGCATTGGGGTCGTTGAAATCAAATGCAGCAGCATCATCAGGATTCCTTTCATCACCCCCATTTCTTCCAATCACCTCACATAACAATAATTTGCCTACAATTTTATCATTGGCTCAACCACAATATACTCATCATTGA 1149 0.3838 MSMLDLNIVDIIHVDDNSTNVQKKLQLLTSPSQISDSRTSNSSIWNPAEEDSSNNSSPFIFDLLKKEKDVSQIVKEEKKEPITRTLFPVSADRGGRLSDYSMTQRMNFDEQNGHSILQQKQPQVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVMFRGVDADINFNLSDYEDLKQMRGLSKEEFVLRLRRKTNENSKRSSTYRRTLSLNKYGQGDPQIITPFVAKEFCHKSPIKRDHEVETSCKPSSIYKGEIVANSNKTGTLHNLDLSLGIPKERGTMQEKGLVNIKKEVPLQVFSNLARKFCSNGSNIALGSLKSNAAASSGFLSSPPFLPITSHNNNLPTILSLAQPQYTHH* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1549 382 MobiDBLite consensus disorder prediction 30 56 - -
Mtr1g1549 382 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677
Mtr1g1549 382 MobiDBLite consensus disorder prediction 110 138 - -
Mtr1g1549 382 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Mtr1g1549 382 Pfam AP2 domain 137 184 IPR001471 GO:0003700|GO:0006355
Mtr1g1549 382 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 365 - -
Mtr1g1549 382 MobiDBLite consensus disorder prediction 110 124 - -
Mtr1g1549 382 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Mtr1g1549 382 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 365 - -
Mtr1g1549 382 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1549 Mtr-Chr1 19516695 19522124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1549 3 299 AP2-EREBP Transcription Factor Family AT5G60120 40.483 1.18e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr1g1549 AP2 3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1549 K09284 - gmx:100783626 381.719