Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1542 ATGAAGATGCAAAGTTCAAAATCTTTTGGGAGAAAACGTGAAGAATGGTCATACACTAAGAACCTTTCATCTTCTGACAAGATAAGTAGTGACACTGTTTTGAAACGGAGAAAGGTGAATAAAGCATTAACAATTTTTAGGGACTTATCACACAAACTCTATTGTGAATACAAGTCAAACCAACCTGTAAAATTGAAAGCAAAATTAAGGGCTTTGGCCGAAGCTACGAGGTTTATGAAAGCGAAACGTCAATGGGAAAACACCGGAAAAAGATTAGGGCATGTAGATGGAATTGAAGTTGGTGACCAATTTCAATATAGGGCCGAACTTATTGTAATCGGTCTCCATCAACAACACTGTTGTGGTATTGATTATTTGGGTAAAGGGGAGAATTCTTTGGCAACCAGCATTGTTGTAACTCATAGATATGCTAATGTTATGAAGTCTTCAGGTTGTTTGCTTTATGAAGGTCATGGCGGTAACCCTAATATAAGGGACAGCGTTGCGCCTCATGATCAGAAATTGGCGCGCGGAAATCTTGCTTTGTGGAATAGTATGAATGCTGGGAGTCCTGTTAGGGTTATATTGCAGGTTTCTGAAAAATGTGAAGTGATGGAAGAGTTGAGCAACAATGTTTCTTATTCATACATATATGATGGGTTGTATTTTGTGGACAATGTGACTCGAGTAAGAGGACAATTTGGAAAACTTGTTTTCAAGTTTGTGCTTAAGAAAATGTCCAACCAACCTGCTAGTGTTTCCCCTGGAGATGTTATGGAATCCAAAACTTTCGTAAAGAGACAAAAGTCTAAAGGTCTTGTTCTCTCCAAGGAAGTTGTTCGAATCAATGATATTTCGGAGGGCAAAGAAAAGCTTCCTATTCGGGTGGTGACACCTGTAAGCTATGTGGAGATACCTAAACCCTTCGGTTACCTAGTCAATATGACTTATCCAAAGATGAATCGTTCAATGCTAGGTGGTGGATGTAATTGTGCGAATGCATGTGTTGATTGTCTTGAATGTGTTTGCATAGCTAAGAATGGTGGGACATTAGCCTATGATGGTAACAGAAAACTTGTTTCTCCTATGAAATCATCCTTTATATATGAGTGTGGCTCTTCTTGCTTGTGTTCGTCGTCTTGCATCAACCGAGTGAGTCAATCCGGTATTCATTTCCAACTTGAAATCTTCAAAACAAAATCGAAGGGGTGGGGTGTTCGAACACGCTCTTTCATTCCATCCGGAAGCTTTGTGTGTGAGCTCATTGGAGAAGTTGTTCATCTCAACAACCAAAAAGTTGGATCAAATCTACATGTTGATGACTATATAATTAATATAGGTGCTTCTGGCAAGGGCTGCATTGATGCAACTAGGCATGGAAACATAGGAAGGTTTATAAATCATAGCTGTTCTCCTAACCTATGTGTGAAAGATGTTATGTATGATCACAGTGATAAGAGTTTACCCCACAAAATGTTGTTTGCTACAAAGGACATACCCGCAGGTAGAGAGCTGAGTTATGATTACAATTGCTGTAAGGTGAATTTCAAGGTTTTGAGTAAAATTTGCTACTGTGGTTCATTGGAATGCAATGGACAAATATATATTGAAGGGCAACGGTATGATGGGCGCTTAATGAAGAACTTGGATTTTAAGAACCAGCAATTAGGGTGTATATAA 1680 0.3887 MKMQSSKSFGRKREEWSYTKNLSSSDKISSDTVLKRRKVNKALTIFRDLSHKLYCEYKSNQPVKLKAKLRALAEATRFMKAKRQWENTGKRLGHVDGIEVGDQFQYRAELIVIGLHQQHCCGIDYLGKGENSLATSIVVTHRYANVMKSSGCLLYEGHGGNPNIRDSVAPHDQKLARGNLALWNSMNAGSPVRVILQVSEKCEVMEELSNNVSYSYIYDGLYFVDNVTRVRGQFGKLVFKFVLKKMSNQPASVSPGDVMESKTFVKRQKSKGLVLSKEVVRINDISEGKEKLPIRVVTPVSYVEIPKPFGYLVNMTYPKMNRSMLGGGCNCANACVDCLECVCIAKNGGTLAYDGNRKLVSPMKSSFIYECGSSCLCSSSCINRVSQSGIHFQLEIFKTKSKGWGVRTRSFIPSGSFVCELIGEVVHLNNQKVGSNLHVDDYIINIGASGKGCIDATRHGNIGRFINHSCSPNLCVKDVMYDHSDKSLPHKMLFATKDIPAGRELSYDYNCCKVNFKVLSKICYCGSLECNGQIYIEGQRYDGRLMKNLDFKNQQLGCI* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1542 559 Pfam Pre-SET motif 285 384 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr1g1542 559 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 21 532 - -
Mtr1g1542 559 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 21 532 - -
Mtr1g1542 559 SMART set_7 392 516 IPR001214 GO:0005515
Mtr1g1542 559 ProSiteProfiles Pre-SET domain profile. 327 389 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr1g1542 559 Gene3D - 75 271 IPR036987 -
Mtr1g1542 559 SMART preset_2 282 376 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr1g1542 559 Gene3D SET domain 274 535 IPR046341 -
Mtr1g1542 559 SUPERFAMILY PUA domain-like 75 254 IPR015947 -
Mtr1g1542 559 ProSiteProfiles YDG domain profile. 93 245 IPR003105 -
Mtr1g1542 559 ProSiteProfiles Post-SET domain profile. 519 535 IPR003616 -
Mtr1g1542 559 ProSiteProfiles SET domain profile. 392 510 IPR001214 GO:0005515
Mtr1g1542 559 Pfam SET domain 403 510 IPR001214 GO:0005515
Mtr1g1542 559 Pfam SAD/SRA domain 92 249 IPR003105 -
Mtr1g1542 559 SUPERFAMILY SET domain 273 525 IPR046341 -
Mtr1g1542 559 SMART G9a_1 88 249 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1542 Mtr-Chr1 19442229 19446445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1542 87 534 Su(var)3-9 homologs AT5G04940 35.861 2.71e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr1g1542 SAD_SRA 1.4e-36 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1542 - - gmx:100807574 582.408