Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1540 ATGTTAGCGATATCTCCTCCTATGTTTTCAACAATTGGATGGCCCTTTGAAGAGTCTTTAAGTCATAACCAGCATCAGAATCAATTATTTAATTTTCATGATCAAGTTGAGGCAGAAATTAATTCAACAGATCCCTCACAATCCACAAGCAGTGACCTTAGCATGGTCAAGAAGCTTGTTCATAATGCTAGCGAACGCGATCGCCGCAAGAAGATCAATAATTTGTATTCTTCACTTCGTTCACTTCTTCCTATTTCTGACCAAATGAAAAAGTTGAGCATTCCAGCAACAATTTCAAGAGTCCTAAAATACATACCAGAAATACAGAAACATGTGGAAGGACTAGTTAAGAGAAAAGAAGAGATCTTATTGAGACTTTCTCCACAAGTAAATGAAGTTAATATAACGAAAGAATCTCAAAAGAAGAAACATAGTTACAACTCTGGTTTTGTAGTTTCAACAAGTTGGCTAAATGATAGTGAAGTTGCTATTCAGATTTCATGTTACACTGTCCACAAGATTCCACTTTCTGAGATTTTGCTATGTTTAGAAAATGATGGAATTTTGTTGCTAAATGTTTCTTCGTCGCAAACCTTTGGAGAGAGGATCTTCTACAATTTACATTTTCAGGTGGATAGAATCCAAAGATTAGAATCCGATATTTTAAATGAGAAGCTGTTATCGATAATGGAAAGGAAGGAGAGTTTTCAAAACAATAAAAATTAA 726 0.3444 MLAISPPMFSTIGWPFEESLSHNQHQNQLFNFHDQVEAEINSTDPSQSTSSDLSMVKKLVHNASERDRRKKINNLYSSLRSLLPISDQMKKLSIPATISRVLKYIPEIQKHVEGLVKRKEEILLRLSPQVNEVNITKESQKKKHSYNSGFVVSTSWLNDSEVAIQISCYTVHKIPLSEILLCLENDGILLLNVSSSQTFGERIFYNLHFQVDRIQRLESDILNEKLLSIMERKESFQNNKN* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1540 241 Pfam Helix-loop-helix DNA-binding domain 57 109 IPR011598 GO:0046983
Mtr1g1540 241 SMART finulus 62 114 IPR011598 GO:0046983
Mtr1g1540 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 129 IPR036638 GO:0046983
Mtr1g1540 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 232 IPR015660 GO:0003700|GO:0006357
Mtr1g1540 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 108 IPR011598 GO:0046983
Mtr1g1540 241 Gene3D - 48 145 IPR036638 GO:0046983
Mtr1g1540 241 CDD bHLH_AtORG2_like 57 132 - -
Mtr1g1540 241 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1540 Mtr-Chr1 19352762 19353975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1540 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.036 2.24e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g1540 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1540 - - mtr:MTR_1g048750 416.001