Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1539 ATGTTAGCGATATCTCCTCCTATGTTTTCAACAATTGGATGGCCCTTTGAGGAGCCTTTAAGCCATAACCAGCATCAGAATTCATTCTACAAAGACACTGTTGATCAATTATTTAATTTTCATGATCAAGTTGAGGCAGAAATTAATTCAACAGATCCCTCACAATCCACAAGCAGTGACCTTAGCATGGTCAAGAAGCTTGTTCATAATGCTAGCGAACGCGATCGCCGCAAGAAGATCAATAATTTGTATTCCTCACTTCGTTCACTTCTTCCTGTTTTTGATCAAATGAAATTGAGCATTCCAGCAACAATTTCAAGAGTCCTAAAATACATACCTGAATTACAGAATCAAGTAGAGGGACTAATTAAGAGAAAGGATGAGATCTTATTGAGACTTTCTCCACAAGTAGAAGAGTTTATTCTAAGCAAAGAATCTCAAAGGAAGAAGCATAGTTACAACTCTGGTTTTGTAGTTTCAACAAGTTGGCTCAATGATAGTGAAATTACCATTCAGATTTCATGTTACACTGTCCACAAGATTCCACTTTCTGAGATCTTGATGTGTTTGGAAAATGATGGCCTTTTGCTGCTTAATCTTTCTTCATCTCAGACCTTTGGAGGGAGAGTCTTCTATAATTTGCATTTCCAGGTAGATAAAACACATAGATTAGAATCCGATATTCTAAATGAGAAGCTCTTATCAGTAATGGATAAGGAAGGGTTATTTCAAGTCAACAAAAATTAG 747 0.3628 MLAISPPMFSTIGWPFEEPLSHNQHQNSFYKDTVDQLFNFHDQVEAEINSTDPSQSTSSDLSMVKKLVHNASERDRRKKINNLYSSLRSLLPVFDQMKLSIPATISRVLKYIPELQNQVEGLIKRKDEILLRLSPQVEEFILSKESQRKKHSYNSGFVVSTSWLNDSEITIQISCYTVHKIPLSEILMCLENDGLLLLNLSSSQTFGGRVFYNLHFQVDKTHRLESDILNEKLLSVMDKEGLFQVNKN* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1539 248 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 238 - -
Mtr1g1539 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 127 IPR036638 GO:0046983
Mtr1g1539 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 115 IPR011598 GO:0046983
Mtr1g1539 248 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 238 IPR015660 GO:0003700|GO:0006357
Mtr1g1539 248 SMART finulus 70 121 IPR011598 GO:0046983
Mtr1g1539 248 Gene3D - 56 152 IPR036638 GO:0046983
Mtr1g1539 248 Pfam Helix-loop-helix DNA-binding domain 65 116 IPR011598 GO:0046983
Mtr1g1539 248 CDD bHLH_AtORG2_like 65 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1539 Mtr-Chr1 19330266 19342442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1539 1 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.562 9.06e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr1g1539 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1539 - - mtr:MTR_1g048750 350.517